Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 18 1935 NP_671714 18 1935 XP_006715890 18 1935 XP_005250160 18 1935 XP_005250159 18 1935 NP_076975 16 5631 NP_001243888 16 5631 NP_001277 16 5631 XP_006716188 16 5631 NP_078966 15 9605 NP_001724 15 9605 XP_006723004 15 9605>NP_005742 Length = 3907 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ESQSSASLI 9 +SQSSASLI Sbjct: 1762 KSQSSASLI 1770>NP_671714 Length = 3899 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ESQSSASLI 9 +SQSSASLI Sbjct: 1762 KSQSSASLI 1770>XP_006715890 Length = 3860 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ESQSSASLI 9 +SQSSASLI Sbjct: 1715 KSQSSASLI 1723>XP_005250160 Length = 3939 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ESQSSASLI 9 +SQSSASLI Sbjct: 1794 KSQSSASLI 1802>XP_005250159 Length = 3952 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ESQSSASLI 9 +SQSSASLI Sbjct: 1794 KSQSSASLI 1802>NP_076975 Length = 326 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ESQSSASLI 9 E+QSS SLI Sbjct: 109 ETQSSISLI 117>NP_001243888 Length = 847 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 ESQSSAS 7 ESQSSAS Sbjct: 740 ESQSSAS 746>NP_001277 Length = 869 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 ESQSSAS 7 ESQSSAS Sbjct: 762 ESQSSAS 768>XP_006716188 Length = 326 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ESQSSASLI 9 E+QSS SLI Sbjct: 109 ETQSSISLI 117>NP_078966 Length = 14507 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 ESQSSASLI 9 ES+++ASL+ Sbjct: 10564 ESETTASLV 10572>NP_001724 Length = 705 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ESQSSASL 8 E+QS+ASL Sbjct: 510 EAQSNASL 517>XP_006723004 Length = 6443 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 ESQSSASLI 9 ES+++ASL+ Sbjct: 2478 ESETTASLV 2486Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.279 0.0942 0.185 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 226,547 Number of extensions: 338 Number of successful extensions: 12 Number of sequences better than 10000.0: 12 Number of HSP's gapped: 12 Number of HSP's successfully gapped: 12 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 18 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (14.7 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |