Cancertope

In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer

Blast-Search of mutated query peptide against human proteome

BLAST Search Results
BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_073713                                                              20     509
NP_001243495                                                           17    2528
NP_004092                                                              17    2528
NP_066301                                                              17    2528
XP_005251089                                                           17    2528
XP_005251088                                                           17    2528
XP_005254491                                                           17    3301
NP_057329                                                              17    4312
NP_073739                                                              17    4312
NP_001005172                                                           17    4312
XP_006714295                                                           17    4312
NP_005674                                                              16    7355
NP_001018048                                                           16    7355
NP_056001                                                              16    7355
NP_001018047                                                           16    7355
NP_150648                                                              16    7355
NP_006148                                                              16    7355
NP_963845                                                              16    7355
NP_001275642                                                           16    7355
NP_068798                                                              16    7355
NP_004264                                                              16    7355
NP_569707                                                              16    7355
NP_002831                                                              16    7355
NP_001005171                                                           16    7355
XP_006718138                                                           16    7355
XP_005247009                                                           16    7355
XP_006710864                                                           16    7355
XP_005271139                                                           16    7355
XP_006710863                                                           16    7355
XP_006710862                                                           16    7355
XP_006710861                                                           16    7355
XP_005271138                                                           16    7355
XP_006710860                                                           16    7355
XP_006710859                                                           16    7355
XP_005271137                                                           16    7355
XP_006710858                                                           16    7355
XP_005271136                                                           16    7355
NP_803875                                                              16    7355
NP_031399                                                              15    9605
NP_598375                                                              15    9605
NP_001269354                                                           15    9605
NP_006563                                                              15    9605
NP_001269370                                                           15    9605
NP_001269369                                                           15    9605
NP_001255968                                                           15    9605
NP_002282                                                              15    9605
NP_031379                                                              15    9605
NP_851320                                                              15    9605
XP_005262773                                                           15    9605
XP_006714140                                                           15    9605
XP_006714139                                                           15    9605
XP_005262771                                                           15    9605
XP_005262770                                                           15    9605
XP_005262769                                                           15    9605
XP_005262768                                                           15    9605
>NP_073713
          Length = 985

 Score = 19.6 bits (39), Expect =   509
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   ESIPFKMAY 9
           ESIP KMAY
Sbjct: 262 ESIPSKMAY 270
>NP_001243495
          Length = 352

 Score = 17.3 bits (33), Expect =  2528
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 2   SIPFKMAY 9
           ++PFK+AY
Sbjct: 123 TLPFKIAY 130
>NP_004092
          Length = 374

 Score = 17.3 bits (33), Expect =  2528
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 2   SIPFKMAY 9
           ++PFK+AY
Sbjct: 145 TLPFKIAY 152
>NP_066301
          Length = 538

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   ESIPFKMAY 9
           +SIP KM Y
Sbjct: 242 KSIPLKMCY 250
>XP_005251089
          Length = 480

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   ESIPFKMAY 9
           +SIP KM Y
Sbjct: 340 KSIPLKMCY 348
>XP_005251088
          Length = 636

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   ESIPFKMAY 9
           +SIP KM Y
Sbjct: 340 KSIPLKMCY 348
>XP_005254491
          Length = 151

 Score = 16.9 bits (32), Expect =  3301
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 3   IPFKMAY 9
           IPF+M+Y
Sbjct: 143 IPFRMSY 149
>NP_057329
          Length = 300

 Score = 16.5 bits (31), Expect =  4312
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2   SIPFKMAY 9
           S+PF +AY
Sbjct: 178 SVPFLLAY 185
>NP_073739
          Length = 1430

 Score = 16.5 bits (31), Expect =  4312
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    ESIPFKMAY 9
            ES+PF+ A+
Sbjct: 1377 ESLPFQFAH 1385
>NP_001005172
          Length = 314

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2  SIPFKMAY 9
          SIPF +AY
Sbjct: 30 SIPFCLAY 37
>XP_006714295
          Length = 256

 Score = 16.5 bits (31), Expect =  4312
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2   SIPFKMAY 9
           S+PF +AY
Sbjct: 134 SVPFLLAY 141
>NP_005674
          Length = 319

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 2  SIPFKM 7
          S+PFKM
Sbjct: 76 SLPFKM 81
>NP_001018048
          Length = 3069

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/7 (57%), Positives = 7/7 (100%)

Query: 3    IPFKMAY 9
            +P+K+AY
Sbjct: 2117 LPYKIAY 2123
>NP_056001
          Length = 3095

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/7 (57%), Positives = 7/7 (100%)

Query: 3    IPFKMAY 9
            +P+K+AY
Sbjct: 2117 LPYKIAY 2123
>NP_001018047
          Length = 3135

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/7 (57%), Positives = 7/7 (100%)

Query: 3    IPFKMAY 9
            +P+K+AY
Sbjct: 2078 LPYKIAY 2084
>NP_150648
          Length = 3174

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/7 (57%), Positives = 7/7 (100%)

Query: 3    IPFKMAY 9
            +P+K+AY
Sbjct: 2117 LPYKIAY 2123
>NP_006148
          Length = 810

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/8 (50%), Positives = 8/8 (100%)

Query: 1   ESIPFKMA 8
           E++P++MA
Sbjct: 138 EALPYRMA 145
>NP_963845
          Length = 763

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/8 (50%), Positives = 8/8 (100%)

Query: 1   ESIPFKMA 8
           E++P++MA
Sbjct: 138 EALPYRMA 145
>NP_001275642
          Length = 838

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/8 (50%), Positives = 8/8 (100%)

Query: 1   ESIPFKMA 8
           E++P++MA
Sbjct: 166 EALPYRMA 173
>NP_068798
          Length = 460

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   ESIPFKMAY 9
           ES+P K+ Y
Sbjct: 102 ESLPVKVKY 110
>NP_004264
          Length = 479

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 2   SIPFKMA 8
           S+PFK+A
Sbjct: 431 SMPFKLA 437
>NP_569707
          Length = 1898

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/8 (50%), Positives = 7/8 (87%)

Query: 2    SIPFKMAY 9
            ++PFK+ Y
Sbjct: 1032 AVPFKILY 1039
>NP_002831
          Length = 1907

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/8 (50%), Positives = 7/8 (87%)

Query: 2    SIPFKMAY 9
            ++PFK+ Y
Sbjct: 1041 AVPFKILY 1048
>NP_001005171
          Length = 314

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 2  SIPFKMAY 9
          SIPF  AY
Sbjct: 30 SIPFCFAY 37
>XP_006718138
          Length = 479

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 2   SIPFKMA 8
           S+PFK+A
Sbjct: 431 SMPFKLA 437
>XP_005247009
          Length = 319

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 2  SIPFKM 7
          S+PFKM
Sbjct: 76 SLPFKM 81
>XP_006710864
          Length = 1729

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/8 (50%), Positives = 7/8 (87%)

Query: 2   SIPFKMAY 9
           ++PFK+ Y
Sbjct: 852 AVPFKILY 859
>XP_005271139
          Length = 1796

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/8 (50%), Positives = 7/8 (87%)

Query: 2   SIPFKMAY 9
           ++PFK+ Y
Sbjct: 930 AVPFKILY 937
>XP_006710863
          Length = 1811

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/8 (50%), Positives = 7/8 (87%)

Query: 2   SIPFKMAY 9
           ++PFK+ Y
Sbjct: 934 AVPFKILY 941
>XP_006710862
          Length = 1820

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/8 (50%), Positives = 7/8 (87%)

Query: 2   SIPFKMAY 9
           ++PFK+ Y
Sbjct: 943 AVPFKILY 950
>XP_006710861
          Length = 1902

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/8 (50%), Positives = 7/8 (87%)

Query: 2    SIPFKMAY 9
            ++PFK+ Y
Sbjct: 1036 AVPFKILY 1043
>XP_005271138
          Length = 1909

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/8 (50%), Positives = 7/8 (87%)

Query: 2    SIPFKMAY 9
            ++PFK+ Y
Sbjct: 1032 AVPFKILY 1039
>XP_006710860
          Length = 1911

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/8 (50%), Positives = 7/8 (87%)

Query: 2    SIPFKMAY 9
            ++PFK+ Y
Sbjct: 1045 AVPFKILY 1052
>XP_006710859
          Length = 1913

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/8 (50%), Positives = 7/8 (87%)

Query: 2    SIPFKMAY 9
            ++PFK+ Y
Sbjct: 1036 AVPFKILY 1043
>XP_005271137
          Length = 1918

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/8 (50%), Positives = 7/8 (87%)

Query: 2    SIPFKMAY 9
            ++PFK+ Y
Sbjct: 1041 AVPFKILY 1048
>XP_006710858
          Length = 1922

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/8 (50%), Positives = 7/8 (87%)

Query: 2    SIPFKMAY 9
            ++PFK+ Y
Sbjct: 1045 AVPFKILY 1052
>XP_005271136
          Length = 1922

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/8 (50%), Positives = 7/8 (87%)

Query: 2    SIPFKMAY 9
            ++PFK+ Y
Sbjct: 1045 AVPFKILY 1052
>NP_803875
          Length = 4243

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 2   SIPFKMAY 9
           S P KMAY
Sbjct: 248 SFPQKMAY 255
>NP_031399
          Length = 582

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   ESIPFKMAY 9
           ES+P ++AY
Sbjct: 461 ESLPNEIAY 469
>NP_598375
          Length = 1101

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2   SIPFKMAY 9
           +IPF +AY
Sbjct: 635 TIPFGVAY 642
>NP_001269354
          Length = 282

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/7 (57%), Positives = 7/7 (100%)

Query: 1   ESIPFKM 7
           +++PFKM
Sbjct: 119 KNVPFKM 125
>NP_006563
          Length = 377

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/7 (57%), Positives = 7/7 (100%)

Query: 1   ESIPFKM 7
           +++PFKM
Sbjct: 214 KNVPFKM 220
>NP_001269370
          Length = 322

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   ESIPFKM 7
           + IPFKM
Sbjct: 160 KKIPFKM 166
>NP_001269369
          Length = 305

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   ESIPFKM 7
           + IPFKM
Sbjct: 143 KKIPFKM 149
>NP_001255968
          Length = 536

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   ESIPFKMAY 9
           ES+P ++AY
Sbjct: 415 ESLPNEIAY 423
>NP_002282
          Length = 1786

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 1   ESIPFKMAY 9
           ++IP+ M Y
Sbjct: 602 DNIPYSMEY 610
>NP_031379
          Length = 381

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   ESIPFKM 7
           + IPFKM
Sbjct: 219 KKIPFKM 225
>NP_851320
          Length = 440

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   ESIPFKM 7
           E IPF+M
Sbjct: 142 EDIPFEM 148
>XP_005262773
          Length = 557

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2  SIPFKMAY 9
          +IPF +AY
Sbjct: 91 TIPFGVAY 98
>XP_006714140
          Length = 729

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2   SIPFKMAY 9
           +IPF +AY
Sbjct: 263 TIPFGVAY 270
>XP_006714139
          Length = 950

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2   SIPFKMAY 9
           +IPF +AY
Sbjct: 635 TIPFGVAY 642
>XP_005262771
          Length = 995

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2   SIPFKMAY 9
           +IPF +AY
Sbjct: 529 TIPFGVAY 536
>XP_005262770
          Length = 995

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2   SIPFKMAY 9
           +IPF +AY
Sbjct: 529 TIPFGVAY 536
>XP_005262769
          Length = 1034

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2   SIPFKMAY 9
           +IPF +AY
Sbjct: 568 TIPFGVAY 575
>XP_005262768
          Length = 1064

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2   SIPFKMAY 9
           +IPF +AY
Sbjct: 598 TIPFGVAY 605
  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.324    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 503,936
Number of extensions: 532
Number of successful extensions: 55
Number of sequences better than 10000.0: 55
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 55
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (16.0 bits)
S2: 28 (15.4 bits)

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