Cancertope

In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer

Blast-Search of mutated query peptide against human proteome

BLAST Search Results
BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_443179                                                              18    1482
NP_036222                                                              17    3301
XP_006710603                                                           17    3301
XP_006710602                                                           17    3301
XP_006710600                                                           17    3301
XP_005270757                                                           17    3301
XP_006710599                                                           17    3301
XP_006710598                                                           17    3301
XP_006710597                                                           17    3301
XP_006710596                                                           17    3301
XP_006710595                                                           17    3301
XP_006710594                                                           17    3301
XP_006710593                                                           17    3301
XP_006710592                                                           17    3301
XP_006710591                                                           17    3301
XP_006710590                                                           17    3301
XP_006710589                                                           17    3301
XP_006710588                                                           17    3301
XP_006710587                                                           17    3301
XP_006710586                                                           17    3301
XP_006710585                                                           17    3301
XP_005270755                                                           17    3301
XP_006710584                                                           17    3301
XP_005270754                                                           17    3301
XP_005270753                                                           17    3301
XP_006710583                                                           17    3301
XP_005270752                                                           17    3301
XP_006710582                                                           17    3301
XP_005270751                                                           17    3301
NP_872114                                                              15    9605
NP_006366                                                              15    9605
NP_001268665                                                           15    9605
XP_005262411                                                           15    9605
>NP_443179
          Length = 2170

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   ESAISTQAE 9
           E AISTQAE
Sbjct: 601 ECAISTQAE 609
>NP_036222
          Length = 5430

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 2647 QSAISTQPE 2655
>XP_006710603
          Length = 5324

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 2647 QSAISTQPE 2655
>XP_006710602
          Length = 7391

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 4714 QSAISTQPE 4722
>XP_006710600
          Length = 5384

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 2647 QSAISTQPE 2655
>XP_005270757
          Length = 5460

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 2786 QSAISTQPE 2794
>XP_006710599
          Length = 5656

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 2807 QSAISTQPE 2815
>XP_006710598
          Length = 7553

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 4704 QSAISTQPE 4712
>XP_006710597
          Length = 7451

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 4714 QSAISTQPE 4722
>XP_006710596
          Length = 7512

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 4663 QSAISTQPE 4671
>XP_006710595
          Length = 7526

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 4677 QSAISTQPE 4685
>XP_006710594
          Length = 7528

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 4679 QSAISTQPE 4687
>XP_006710593
          Length = 7539

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 4690 QSAISTQPE 4698
>XP_006710592
          Length = 7544

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 4695 QSAISTQPE 4703
>XP_006710591
          Length = 7558

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 4709 QSAISTQPE 4717
>XP_006710590
          Length = 7563

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 4714 QSAISTQPE 4722
>XP_006710589
          Length = 7595

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 4746 QSAISTQPE 4754
>XP_006710588
          Length = 7614

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 4874 QSAISTQPE 4882
>XP_006710587
          Length = 7645

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 4796 QSAISTQPE 4804
>XP_006710586
          Length = 7645

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 4874 QSAISTQPE 4882
>XP_006710585
          Length = 7657

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 4874 QSAISTQPE 4882
>XP_005270755
          Length = 7663

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 4874 QSAISTQPE 4882
>XP_006710584
          Length = 7686

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 4874 QSAISTQPE 4882
>XP_005270754
          Length = 7694

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 4874 QSAISTQPE 4882
>XP_005270753
          Length = 7700

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 4874 QSAISTQPE 4882
>XP_006710583
          Length = 7702

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 4853 QSAISTQPE 4861
>XP_005270752
          Length = 7717

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 4874 QSAISTQPE 4882
>XP_006710582
          Length = 7720

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 4874 QSAISTQPE 4882
>XP_005270751
          Length = 7723

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    ESAISTQAE 9
            +SAISTQ E
Sbjct: 4874 QSAISTQPE 4882
>NP_872114
          Length = 610

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   ESAISTQAE 9
           ESA+ +QAE
Sbjct: 404 ESALVSQAE 412
>NP_006366
          Length = 581

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   ESAISTQAE 9
           ESA+ +QAE
Sbjct: 375 ESALVSQAE 383
>NP_001268665
          Length = 581

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   ESAISTQAE 9
           ESA+ +QAE
Sbjct: 375 ESALVSQAE 383
>XP_005262411
          Length = 610

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   ESAISTQAE 9
           ESA+ +QAE
Sbjct: 404 ESALVSQAE 412
  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.276   0.0911    0.186 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 236,663
Number of extensions: 218
Number of successful extensions: 33
Number of sequences better than 10000.0: 33
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 33
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 18 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (14.6 bits)
S2: 28 (15.4 bits)

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