Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000258 20 390 NP_001035957 20 390 XP_006721991 20 390 XP_006721990 20 390 XP_006721989 20 390 XP_005258041 20 390 XP_006721988 20 390 XP_006721987 20 390 XP_006721986 20 390 XP_005258040 20 390 XP_006721985 20 390 NP_060362 18 1935 XP_005246736 18 1935 XP_005246735 18 1935 XP_005246734 18 1935 XP_005246733 18 1935 NP_085146 16 7355 NP_663693 16 7355 NP_055688 15 9605 NP_005759 15 9605 XP_005273421 15 9605 XP_006711758 15 9605 XP_005273420 15 9605 XP_005273419 15 9605>NP_000258 Length = 2818 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 EQATKLIIN 9 EQATKLI+N Sbjct: 785 EQATKLILN 793>NP_001035957 Length = 2839 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 EQATKLIIN 9 EQATKLI+N Sbjct: 785 EQATKLILN 793>XP_006721991 Length = 1632 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 EQATKLIIN 9 EQATKLI+N Sbjct: 795 EQATKLILN 803>XP_006721990 Length = 2823 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 EQATKLIIN 9 EQATKLI+N Sbjct: 795 EQATKLILN 803>XP_006721989 Length = 2823 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 EQATKLIIN 9 EQATKLI+N Sbjct: 795 EQATKLILN 803>XP_005258041 Length = 2836 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 EQATKLIIN 9 EQATKLI+N Sbjct: 785 EQATKLILN 793>XP_006721988 Length = 2846 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 EQATKLIIN 9 EQATKLI+N Sbjct: 795 EQATKLILN 803>XP_006721987 Length = 2849 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 EQATKLIIN 9 EQATKLI+N Sbjct: 795 EQATKLILN 803>XP_006721986 Length = 2854 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 EQATKLIIN 9 EQATKLI+N Sbjct: 782 EQATKLILN 790>XP_005258040 Length = 2857 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 EQATKLIIN 9 EQATKLI+N Sbjct: 785 EQATKLILN 793>XP_006721985 Length = 2867 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 EQATKLIIN 9 EQATKLI+N Sbjct: 795 EQATKLILN 803>NP_060362 Length = 930 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 EQATKLIIN 9 EQA K+IIN Sbjct: 389 EQAMKMIIN 397>XP_005246736 Length = 976 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 EQATKLIIN 9 EQA K+IIN Sbjct: 431 EQAMKMIIN 439>XP_005246735 Length = 976 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 EQATKLIIN 9 EQA K+IIN Sbjct: 431 EQAMKMIIN 439>XP_005246734 Length = 934 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 EQATKLIIN 9 EQA K+IIN Sbjct: 389 EQAMKMIIN 397>XP_005246733 Length = 972 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 EQATKLIIN 9 EQA K+IIN Sbjct: 431 EQAMKMIIN 439>NP_085146 Length = 348 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EQATKLIIN 9 ++ATK+I N Sbjct: 234 DEATKMIAN 242>NP_663693 Length = 351 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EQATKLIIN 9 ++ATK+I N Sbjct: 237 DEATKMIAN 245>NP_055688 Length = 370 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ATKLIIN 9 ATK+I+N Sbjct: 217 ATKIILN 223>NP_005759 Length = 487 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 EQATKLIIN 9 EQA +LII+ Sbjct: 39 EQALRLIIS 47>XP_005273421 Length = 370 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ATKLIIN 9 ATK+I+N Sbjct: 217 ATKIILN 223>XP_006711758 Length = 388 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ATKLIIN 9 ATK+I+N Sbjct: 235 ATKIILN 241>XP_005273420 Length = 396 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ATKLIIN 9 ATK+I+N Sbjct: 243 ATKIILN 249>XP_005273419 Length = 403 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ATKLIIN 9 ATK+I+N Sbjct: 250 ATKIILN 256Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.310 0.127 0.298 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 295,234 Number of extensions: 465 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |