Cancertope

In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer

Blast-Search of mutated query peptide against human proteome

BLAST Search Results
BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_005742                                                              18    1135
NP_671714                                                              18    1135
XP_006715890                                                           18    1135
XP_005250160                                                           18    1135
XP_005250159                                                           18    1135
NP_037368                                                              15    9605
NP_003423                                                              15    9605
NP_958843                                                              15    9605
XP_006719710                                                           15    9605
XP_006719709                                                           15    9605
XP_006719708                                                           15    9605
XP_006719707                                                           15    9605
XP_006719706                                                           15    9605
XP_005248422                                                           15    9605
XP_005248419                                                           15    9605
XP_005248420                                                           15    9605
XP_005248418                                                           15    9605
XP_005248417                                                           15    9605
XP_005248416                                                           15    9605
NP_982279                                                              15    9605
>NP_005742
          Length = 3907

 Score = 18.5 bits (36), Expect =  1135
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    ENIASSKQA 9
            EN ASSKQA
Sbjct: 1469 ENTASSKQA 1477
>NP_671714
          Length = 3899

 Score = 18.5 bits (36), Expect =  1135
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    ENIASSKQA 9
            EN ASSKQA
Sbjct: 1469 ENTASSKQA 1477
>XP_006715890
          Length = 3860

 Score = 18.5 bits (36), Expect =  1135
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    ENIASSKQA 9
            EN ASSKQA
Sbjct: 1469 ENTASSKQA 1477
>XP_005250160
          Length = 3939

 Score = 18.5 bits (36), Expect =  1135
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    ENIASSKQA 9
            EN ASSKQA
Sbjct: 1469 ENTASSKQA 1477
>XP_005250159
          Length = 3952

 Score = 18.5 bits (36), Expect =  1135
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1    ENIASSKQA 9
            EN ASSKQA
Sbjct: 1469 ENTASSKQA 1477
>NP_037368
          Length = 475

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1  ENIASSKQ 8
          EN+ASS Q
Sbjct: 72 ENLASSLQ 79
>NP_003423
          Length = 589

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   ENIASSKQA 9
           E +AS+KQ+
Sbjct: 188 EEVASAKQS 196
>NP_958843
          Length = 684

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 2   NIASSKQ 8
           NIA SKQ
Sbjct: 269 NIAKSKQ 275
>XP_006719710
          Length = 523

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 2   NIASSKQ 8
           NIA SKQ
Sbjct: 108 NIAKSKQ 114
>XP_006719709
          Length = 632

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 2   NIASSKQ 8
           NIA SKQ
Sbjct: 269 NIAKSKQ 275
>XP_006719708
          Length = 634

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 2   NIASSKQ 8
           NIA SKQ
Sbjct: 269 NIAKSKQ 275
>XP_006719707
          Length = 682

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 2   NIASSKQ 8
           NIA SKQ
Sbjct: 269 NIAKSKQ 275
>XP_006719706
          Length = 684

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 2   NIASSKQ 8
           NIA SKQ
Sbjct: 269 NIAKSKQ 275
>XP_005248422
          Length = 589

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   ENIASSKQA 9
           E +AS+KQ+
Sbjct: 188 EEVASAKQS 196
>XP_005248419
          Length = 623

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   ENIASSKQA 9
           E +AS+KQ+
Sbjct: 188 EEVASAKQS 196
>XP_005248420
          Length = 623

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   ENIASSKQA 9
           E +AS+KQ+
Sbjct: 188 EEVASAKQS 196
>XP_005248418
          Length = 623

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   ENIASSKQA 9
           E +AS+KQ+
Sbjct: 188 EEVASAKQS 196
>XP_005248417
          Length = 623

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   ENIASSKQA 9
           E +AS+KQ+
Sbjct: 188 EEVASAKQS 196
>XP_005248416
          Length = 623

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   ENIASSKQA 9
           E +AS+KQ+
Sbjct: 188 EEVASAKQS 196
>NP_982279
          Length = 367

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   ENIASSKQA 9
           E  ASSK+A
Sbjct: 349 EQFASSKEA 357
  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.281   0.0951    0.202 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 268,265
Number of extensions: 316
Number of successful extensions: 20
Number of sequences better than 10000.0: 20
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 20
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 18 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (14.7 bits)
S2: 28 (15.4 bits)

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