Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004988 16 7355 NP_114161 16 7355 NP_115894 16 7355 XP_006713841 16 7355 XP_005264828 16 7355 XP_005245254 16 7355 XP_005245253 16 7355 NP_878918 15 9605 NP_055995 15 9605 NP_620168 15 9605 NP_001171473 15 9605 XP_006722720 15 9605 XP_006722719 15 9605 XP_006722718 15 9605 XP_006722717 15 9605 XP_006720147 15 9605 XP_005267517 15 9605 XP_005267516 15 9605 XP_005267515 15 9605 XP_005267514 15 9605 XP_005267513 15 9605 XP_005267512 15 9605 XP_005267511 15 9605>NP_004988 Length = 477 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MLFIRSTQ 9 +LFIRS Q Sbjct: 230 ILFIRSAQ 237>NP_114161 Length = 569 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 FIRSTQ 9 FIRSTQ Sbjct: 439 FIRSTQ 444>NP_115894 Length = 601 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LFIRSTQ 9 LF+R+TQ Sbjct: 536 LFVRATQ 542>XP_006713841 Length = 540 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 FIRSTQ 9 FIRSTQ Sbjct: 439 FIRSTQ 444>XP_005264828 Length = 524 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LFIRSTQ 9 LF+R+TQ Sbjct: 459 LFVRATQ 465>XP_005245254 Length = 315 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MLFIRSTQ 9 +LFIRS Q Sbjct: 68 ILFIRSAQ 75>XP_005245253 Length = 477 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MLFIRSTQ 9 +LFIRS Q Sbjct: 230 ILFIRSAQ 237>NP_878918 Length = 6907 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EMLFIRSTQ 9 +ML ++STQ Sbjct: 2816 QMLVLKSTQ 2824>NP_055995 Length = 6885 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EMLFIRSTQ 9 +ML ++STQ Sbjct: 2816 QMLVLKSTQ 2824>NP_620168 Length = 1300 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MLFIRSTQ 9 +LFIR+T+ Sbjct: 192 LLFIRATR 199>NP_001171473 Length = 1263 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MLFIRSTQ 9 +LFIR+T+ Sbjct: 139 LLFIRATR 146>XP_006722720 Length = 820 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MLFIRSTQ 9 +LFIR+T+ Sbjct: 192 LLFIRATR 199>XP_006722719 Length = 1224 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MLFIRSTQ 9 +LFIR+T+ Sbjct: 106 LLFIRATR 113>XP_006722718 Length = 1310 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MLFIRSTQ 9 +LFIR+T+ Sbjct: 192 LLFIRATR 199>XP_006722717 Length = 1310 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MLFIRSTQ 9 +LFIR+T+ Sbjct: 192 LLFIRATR 199>XP_006720147 Length = 4788 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EMLFIRSTQ 9 +ML ++STQ Sbjct: 2816 QMLVLKSTQ 2824>XP_005267517 Length = 6883 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EMLFIRSTQ 9 +ML ++STQ Sbjct: 2816 QMLVLKSTQ 2824>XP_005267516 Length = 6884 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EMLFIRSTQ 9 +ML ++STQ Sbjct: 2816 QMLVLKSTQ 2824>XP_005267515 Length = 6899 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EMLFIRSTQ 9 +ML ++STQ Sbjct: 2816 QMLVLKSTQ 2824>XP_005267514 Length = 6908 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EMLFIRSTQ 9 +ML ++STQ Sbjct: 2816 QMLVLKSTQ 2824>XP_005267513 Length = 6921 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EMLFIRSTQ 9 +ML ++STQ Sbjct: 2816 QMLVLKSTQ 2824>XP_005267512 Length = 6922 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EMLFIRSTQ 9 +ML ++STQ Sbjct: 2816 QMLVLKSTQ 2824>XP_005267511 Length = 6922 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EMLFIRSTQ 9 +ML ++STQ Sbjct: 2816 QMLVLKSTQ 2824Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.334 0.137 0.346 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 320,832 Number of extensions: 426 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |