Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006197 19 665 XP_006714104 19 665 XP_005265800 19 665 XP_006714103 19 665 XP_006714102 19 665 NP_002178 17 3301 NP_001186068 17 4312 NP_067032 17 4312 NP_001186067 17 4312 NP_112572 17 4312 NP_004357 16 7355 NP_001164560 16 7355 NP_001164559 16 7355 NP_001164558 16 7355 NP_006511 16 7355 XP_006713552 16 7355 XP_006713551 16 7355 NP_001186566 15 9605 NP_001109 15 9605 NP_001186564 15 9605 NP_001186565 15 9605 NP_005692 15 9605 NP_001103224 15 9605 NP_001036053 15 9605 NP_001036046 15 9605 XP_006719593 15 9605 XP_006719591 15 9605 XP_006715710 15 9605 XP_006715709 15 9605 XP_006715708 15 9605>NP_006197 Length = 1089 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EMIVVTCAV 9 E IVVTCAV Sbjct: 229 ETIVVTCAV 237>XP_006714104 Length = 832 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EMIVVTCAV 9 E IVVTCAV Sbjct: 254 ETIVVTCAV 262>XP_005265800 Length = 1089 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EMIVVTCAV 9 E IVVTCAV Sbjct: 229 ETIVVTCAV 237>XP_006714103 Length = 1111 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EMIVVTCAV 9 E IVVTCAV Sbjct: 251 ETIVVTCAV 259>XP_006714102 Length = 1114 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EMIVVTCAV 9 E IVVTCAV Sbjct: 254 ETIVVTCAV 262>NP_002178 Length = 328 Score = 16.9 bits (32), Expect = 3301 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 EMIVVTC 7 EM+V+TC Sbjct: 44 EMVVLTC 50>NP_001186068 Length = 1024 Score = 16.5 bits (31), Expect = 4312 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 IVVTCAV 9 +V+TCA+ Sbjct: 341 VVITCAI 347>NP_067032 Length = 1024 Score = 16.5 bits (31), Expect = 4312 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 IVVTCAV 9 +V+TCA+ Sbjct: 341 VVITCAI 347>NP_001186067 Length = 1024 Score = 16.5 bits (31), Expect = 4312 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 IVVTCAV 9 +V+TCA+ Sbjct: 341 VVITCAI 347>NP_112572 Length = 515 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EMIVVTCAV 9 EM+V+ C+V Sbjct: 304 EMLVLVCSV 312>NP_004357 Length = 898 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 EMIVVTCAV 9 EM+ CAV Sbjct: 238 EMLAAACAV 246>NP_001164560 Length = 869 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 EMIVVTCAV 9 EM+ CAV Sbjct: 238 EMLAAACAV 246>NP_001164559 Length = 854 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 EMIVVTCAV 9 EM+ CAV Sbjct: 194 EMLAAACAV 202>NP_001164558 Length = 881 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 EMIVVTCAV 9 EM+ CAV Sbjct: 238 EMLAAACAV 246>NP_006511 Length = 116 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VVTCAV 9 +VTCAV Sbjct: 65 IVTCAV 70>XP_006713552 Length = 863 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 EMIVVTCAV 9 EM+ CAV Sbjct: 238 EMLAAACAV 246>XP_006713551 Length = 872 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 EMIVVTCAV 9 EM+ CAV Sbjct: 212 EMLAAACAV 220>NP_001186566 Length = 447 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 EMIVVTC 7 EM++V+C Sbjct: 71 EMVLVSC 77>NP_001109 Length = 468 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 EMIVVTC 7 EM++V+C Sbjct: 71 EMVLVSC 77>NP_001186564 Length = 496 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 EMIVVTC 7 EM++V+C Sbjct: 71 EMVLVSC 77>NP_001186565 Length = 495 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 EMIVVTC 7 EM++V+C Sbjct: 71 EMVLVSC 77>NP_005692 Length = 360 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 EMIVVTCAV 9 E IVV C V Sbjct: 118 EWIVVVCPV 126>NP_001103224 Length = 2215 Score = 15.4 bits (28), Expect = 9605 Identities = 3/8 (37%), Positives = 7/8 (87%) Query: 2 MIVVTCAV 9 M+++TC + Sbjct: 7 MVILTCLI 14>NP_001036053 Length = 360 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 EMIVVTCAV 9 E IVV C V Sbjct: 118 EWIVVVCPV 126>NP_001036046 Length = 360 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 EMIVVTCAV 9 E IVV C V Sbjct: 118 EWIVVVCPV 126>XP_006719593 Length = 1304 Score = 15.4 bits (28), Expect = 9605 Identities = 3/8 (37%), Positives = 7/8 (87%) Query: 2 MIVVTCAV 9 M+++TC + Sbjct: 7 MVILTCLI 14>XP_006719591 Length = 2230 Score = 15.4 bits (28), Expect = 9605 Identities = 3/8 (37%), Positives = 7/8 (87%) Query: 2 MIVVTCAV 9 M+++TC + Sbjct: 7 MVILTCLI 14>XP_006715710 Length = 475 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 EMIVVTC 7 EM++V+C Sbjct: 71 EMVLVSC 77>XP_006715709 Length = 489 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 EMIVVTC 7 EM++V+C Sbjct: 71 EMVLVSC 77>XP_006715708 Length = 496 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 EMIVVTC 7 EM++V+C Sbjct: 71 EMVLVSC 77Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.337 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 504,247 Number of extensions: 388 Number of successful extensions: 30 Number of sequences better than 10000.0: 30 Number of HSP's gapped: 30 Number of HSP's successfully gapped: 30 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |