Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005091 18 1135 NP_653080 18 1135 XP_005267292 18 1135 XP_005267291 18 1135 XP_005267290 18 1135 NP_060003 17 4312 XP_005256707 17 4312 NP_060004 16 5631 NP_002463 16 5631 NP_001106970 16 5631 NP_878250 16 5631 NP_001093582 16 5631 XP_006720131 16 5631>NP_005091 Length = 1782 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 EMATKSAV 8 EMATKSAV Sbjct: 123 EMATKSAV 130>NP_653080 Length = 1684 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 EMATKSAV 8 EMATKSAV Sbjct: 25 EMATKSAV 32>XP_005267292 Length = 1677 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 EMATKSAV 8 EMATKSAV Sbjct: 18 EMATKSAV 25>XP_005267291 Length = 1684 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 EMATKSAV 8 EMATKSAV Sbjct: 25 EMATKSAV 32>XP_005267290 Length = 1782 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 EMATKSAV 8 EMATKSAV Sbjct: 123 EMATKSAV 130>NP_060003 Length = 1939 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 MATKSAVD 9 MAT SAVD Sbjct: 333 MATDSAVD 340>XP_005256707 Length = 1940 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 MATKSAVD 9 MAT SAVD Sbjct: 333 MATDSAVD 340>NP_060004 Length = 1941 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MATKSAVD 9 MAT SA+D Sbjct: 333 MATDSAID 340>NP_002463 Length = 1937 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MATKSAVD 9 MAT SA+D Sbjct: 333 MATDSAID 340>NP_001106970 Length = 956 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 EMATKSAVD 9 ++ATK++VD Sbjct: 923 DLATKNSVD 931>NP_878250 Length = 727 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 EMATKSAVD 9 ++ATK++VD Sbjct: 694 DLATKNSVD 702>NP_001093582 Length = 1941 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MATKSAVD 9 MAT SA+D Sbjct: 333 MATDSAID 340>XP_006720131 Length = 957 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 EMATKSAVD 9 ++ATK++VD Sbjct: 924 DLATKNSVD 932Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.295 0.103 0.235 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 205,832 Number of extensions: 138 Number of successful extensions: 13 Number of sequences better than 10000.0: 13 Number of HSP's gapped: 13 Number of HSP's successfully gapped: 13 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.2 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |