Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 20 509 NP_001075109 20 509 NP_000426 16 5631 NP_065873 16 5631 NP_848652 16 5631 NP_001258932 16 5631 XP_005259981 16 5631 XP_006717257 16 5631 XP_006717256 16 5631 XP_006710219 16 5631 NP_060420 16 7355 NP_001230271 16 7355 NP_005952 16 7355 XP_006725823 16 7355 XP_006725595 16 7355 XP_005257548 16 7355 NP_005742 15 9605 NP_671714 15 9605 NP_689777 15 9605 NP_060360 15 9605 XP_005250858 15 9605 XP_005250857 15 9605 XP_005250160 15 9605 XP_005250159 15 9605 NP_005584 15 9605>NP_008835 Length = 4128 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ELMRSSVDN 9 ELM+SSVDN Sbjct: 1581 ELMQSSVDN 1589>NP_001075109 Length = 4097 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ELMRSSVDN 9 ELM+SSVDN Sbjct: 1581 ELMQSSVDN 1589>NP_000426 Length = 2321 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ELMRSSVD 8 EL+RSS D Sbjct: 1523 ELLRSSAD 1530>NP_065873 Length = 1235 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ELMRSSVDN 9 +LMR+ +DN Sbjct: 441 DLMRAKMDN 449>NP_848652 Length = 302 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ELMRSSVDN 9 EL+R SVD+ Sbjct: 209 ELLRMSVDS 217>NP_001258932 Length = 1211 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ELMRSSVDN 9 +LMR+ +DN Sbjct: 396 DLMRAKMDN 404>XP_005259981 Length = 2269 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ELMRSSVD 8 EL+RSS D Sbjct: 1471 ELLRSSAD 1478>XP_006717257 Length = 1083 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ELMRSSVDN 9 +LMR+ +DN Sbjct: 268 DLMRAKMDN 276>XP_006717256 Length = 1172 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ELMRSSVDN 9 +LMR+ +DN Sbjct: 357 DLMRAKMDN 365>XP_006710219 Length = 218 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ELMRSSVDN 9 EL+R SVD+ Sbjct: 125 ELLRMSVDS 133>NP_060420 Length = 1142 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 MRSSVDN 9 MRSSVD+ Sbjct: 920 MRSSVDS 926>NP_001230271 Length = 1030 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 MRSSVDN 9 MRSSVD+ Sbjct: 920 MRSSVDS 926>NP_005952 Length = 2439 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 RSSVDN 9 RSSVDN Sbjct: 654 RSSVDN 659>XP_006725823 Length = 1825 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 RSSVDN 9 RSSVDN Sbjct: 654 RSSVDN 659>XP_006725595 Length = 1311 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 RSSVDN 9 RSSVDN Sbjct: 654 RSSVDN 659>XP_005257548 Length = 749 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 MRSSVDN 9 MRSSVD+ Sbjct: 527 MRSSVDS 533>NP_005742 Length = 3907 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RSSVDN 9 RSS+DN Sbjct: 1640 RSSIDN 1645>NP_671714 Length = 3899 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RSSVDN 9 RSS+DN Sbjct: 1640 RSSIDN 1645>NP_689777 Length = 3997 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ELMRSSVDN 9 EL+R ++DN Sbjct: 3385 ELLRLTLDN 3393>NP_060360 Length = 4022 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ELMRSSVDN 9 EL+R ++DN Sbjct: 3410 ELLRLTLDN 3418>XP_005250858 Length = 4022 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ELMRSSVDN 9 EL+R ++DN Sbjct: 3410 ELLRLTLDN 3418>XP_005250857 Length = 4022 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ELMRSSVDN 9 EL+R ++DN Sbjct: 3410 ELLRLTLDN 3418>XP_005250160 Length = 3939 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RSSVDN 9 RSS+DN Sbjct: 1640 RSSIDN 1645>XP_005250159 Length = 3952 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RSSVDN 9 RSS+DN Sbjct: 1640 RSSIDN 1645>NP_005584 Length = 255 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 ELMRSSVDN 9 EL+R V+N Sbjct: 136 ELLREQVEN 144Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.305 0.118 0.283 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 340,305 Number of extensions: 556 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |