Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_694574 18 1935 XP_005256319 18 1935 XP_006721414 18 1935 NP_001013433 17 2528 NP_060785 17 2528 NP_361014 17 2528 NP_001307 17 2528 NP_061182 17 3301 NP_001123509 17 3301 XP_005247181 17 4312 NP_039227 17 4312 NP_039228 17 4312 NP_001004466 17 4312 NP_001004465 17 4312 NP_001862 17 4312 NP_000005 16 5631 XP_006726604 16 5631 XP_006726603 16 5631 XP_006725215 16 5631 XP_006719240 16 5631 XP_006719237 16 5631 XP_006719119 16 5631 NP_653252 16 7355 NP_001093900 16 7355 NP_001406 16 7355 XP_005251225 16 7355 XP_006716483 16 7355 XP_005251224 16 7355 XP_006714348 16 7355 XP_006714347 16 7355 NP_001093896 16 7355 NP_001093898 16 7355 NP_066982 16 7355 NP_001093897 16 7355 NP_001093899 16 7355 NP_001261 15 9605 NP_002855 15 9605 NP_003787 15 9605 NP_001239570 15 9605 XP_005259420 15 9605 XP_005259419 15 9605 XP_005271924 15 9605 XP_005271923 15 9605>NP_694574 Length = 896 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 ELKYNILVS 9 E++YNILV+ Sbjct: 344 EMEYNILVN 352>XP_005256319 Length = 678 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 ELKYNILVS 9 E++YNILV+ Sbjct: 344 EMEYNILVN 352>XP_006721414 Length = 810 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 ELKYNILVS 9 E++YNILV+ Sbjct: 258 EMEYNILVN 266>NP_001013433 Length = 589 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ELKYNILVS 9 ELK NILVS Sbjct: 470 ELKDNILVS 478>NP_060785 Length = 627 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ELKYNILVS 9 ELK NILVS Sbjct: 508 ELKDNILVS 516>NP_361014 Length = 707 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ELKYNILVS 9 ELK NILVS Sbjct: 588 ELKDNILVS 596>NP_001307 Length = 971 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 ELKYNILVS 9 E+KY++LVS Sbjct: 307 EVKYDLLVS 315>NP_061182 Length = 334 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ELKYNILVS 9 +L YN+LVS Sbjct: 245 DLAYNLLVS 253>NP_001123509 Length = 326 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ELKYNILVS 9 +L YN+LVS Sbjct: 237 DLAYNLLVS 245>XP_005247181 Length = 417 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ELKYNILVS 9 EL+Y +L+S Sbjct: 87 ELQYKVLIS 95>NP_039227 Length = 315 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKYNILVS 9 L+YN+L+S Sbjct: 130 LRYNVLMS 137>NP_039228 Length = 318 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKYNILVS 9 L+YN+L+S Sbjct: 130 LRYNVLMS 137>NP_001004466 Length = 315 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKYNILVS 9 L+YN+L+S Sbjct: 130 LRYNVLMS 137>NP_001004465 Length = 316 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKYNILVS 9 L+YN+L+S Sbjct: 131 LRYNVLMS 138>NP_001862 Length = 417 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ELKYNILVS 9 EL+Y +L+S Sbjct: 87 ELQYKVLIS 95>NP_000005 Length = 1474 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LKYNIL 7 LKYNIL Sbjct: 1328 LKYNIL 1333>XP_006726604 Length = 232 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LKYNILV 8 LKYN+L+ Sbjct: 107 LKYNVLL 113>XP_006726603 Length = 1264 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LKYNILV 8 LKYN+L+ Sbjct: 1125 LKYNVLL 1131>XP_006725215 Length = 1264 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LKYNILV 8 LKYN+L+ Sbjct: 1125 LKYNVLL 1131>XP_006719240 Length = 113 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LKYNILV 8 LKYN+L+ Sbjct: 21 LKYNVLL 27>XP_006719237 Length = 1263 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LKYNILV 8 LKYN+L+ Sbjct: 1124 LKYNVLL 1130>XP_006719119 Length = 1512 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LKYNIL 7 LKYNIL Sbjct: 1328 LKYNIL 1333>NP_653252 Length = 1463 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ELKYNILVS 9 E +YN LVS Sbjct: 688 EFRYNDLVS 696>NP_001093900 Length = 516 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ELKYNILV 8 E+KYN +V Sbjct: 459 EIKYNSMV 466>NP_001406 Length = 472 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ELKYNILV 8 +LKYNI V Sbjct: 227 QLKYNIEV 234>XP_005251225 Length = 848 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ELKYNILVS 9 E +YN LVS Sbjct: 73 EFRYNDLVS 81>XP_006716483 Length = 1367 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ELKYNILVS 9 E +YN LVS Sbjct: 592 EFRYNDLVS 600>XP_005251224 Length = 1439 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ELKYNILVS 9 E +YN LVS Sbjct: 664 EFRYNDLVS 672>XP_006714348 Length = 478 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ELKYNILV 8 E+KYN +V Sbjct: 421 EIKYNSMV 428>XP_006714347 Length = 527 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ELKYNILV 8 E+KYN +V Sbjct: 470 EIKYNSMV 477>NP_001093896 Length = 608 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ELKYNILV 8 E+KYN +V Sbjct: 551 EIKYNSMV 558>NP_001093898 Length = 559 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ELKYNILV 8 E+KYN +V Sbjct: 502 EIKYNSMV 509>NP_066982 Length = 607 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ELKYNILV 8 E+KYN +V Sbjct: 550 EIKYNSMV 557>NP_001093897 Length = 607 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ELKYNILV 8 E+KYN +V Sbjct: 550 EIKYNSMV 557>NP_001093899 Length = 558 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ELKYNILV 8 E+KYN +V Sbjct: 501 EIKYNSMV 508>NP_001261 Length = 1710 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKYNILVS 9 LK+NIL++ Sbjct: 584 LKFNILLT 591>NP_002855 Length = 1482 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 LKYNIL 7 +KYNIL Sbjct: 1334 MKYNIL 1339>NP_003787 Length = 535 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ELKYNILV 8 +L YNI+V Sbjct: 71 KLSYNIMV 78>NP_001239570 Length = 475 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ELKYNILV 8 +L YNI+V Sbjct: 53 KLSYNIMV 60>XP_005259420 Length = 493 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ELKYNILV 8 +L YNI+V Sbjct: 71 KLSYNIMV 78>XP_005259419 Length = 517 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ELKYNILV 8 +L YNI+V Sbjct: 53 KLSYNIMV 60>XP_005271924 Length = 1710 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKYNILVS 9 LK+NIL++ Sbjct: 584 LKFNILLT 591>XP_005271923 Length = 1798 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKYNILVS 9 LK+NIL++ Sbjct: 584 LKFNILLT 591Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.316 0.138 0.345 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 471,895 Number of extensions: 755 Number of successful extensions: 43 Number of sequences better than 10000.0: 43 Number of HSP's gapped: 43 Number of HSP's successfully gapped: 43 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |