Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 19 665 NP_001075109 19 665 XP_006720120 17 4312 XP_006720119 17 4312 NP_689659 17 4312 NP_008949 16 7355 XP_006717006 16 7355 XP_006717005 16 7355 XP_006717004 16 7355 XP_006717003 16 7355 XP_005251736 16 7355 NP_079390 15 9605 NP_055497 15 9605 NP_005024 15 9605 NP_079490 15 9605 NP_001137301 15 9605 NP_005081 15 9605 NP_001029366 15 9605 NP_061748 15 9605 NP_115270 15 9605 NP_001185517 15 9605 XP_005266829 15 9605 XP_006722615 15 9605 XP_006719673 15 9605 XP_005269218 15 9605 XP_005269217 15 9605 XP_006719672 15 9605 XP_005269215 15 9605 XP_006716553 15 9605 XP_006716552 15 9605 XP_006716551 15 9605 XP_006716550 15 9605 NP_001108105 15 9605>NP_008835 Length = 4128 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ELKTQVTSA 9 ELKTQ+TSA Sbjct: 203 ELKTQMTSA 211>NP_001075109 Length = 4097 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ELKTQVTSA 9 ELKTQ+TSA Sbjct: 203 ELKTQMTSA 211>XP_006720120 Length = 1055 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ELKTQVTSA 9 EL+TQ+T A Sbjct: 272 ELRTQLTKA 280Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ELKTQVTSA 9 ELKTQ+ +A Sbjct: 488 ELKTQLYAA 496>XP_006720119 Length = 1094 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ELKTQVTSA 9 EL+TQ+T A Sbjct: 311 ELRTQLTKA 319Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ELKTQVTSA 9 ELKTQ+ +A Sbjct: 527 ELKTQLYAA 535>NP_689659 Length = 1094 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ELKTQVTSA 9 EL+TQ+T A Sbjct: 311 ELRTQLTKA 319Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ELKTQVTSA 9 ELKTQ+ +A Sbjct: 527 ELKTQLYAA 535>NP_008949 Length = 2325 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ELKTQVTS 8 +LK+QVTS Sbjct: 1584 KLKSQVTS 1591>XP_006717006 Length = 1760 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ELKTQVTS 8 +LK+QVTS Sbjct: 1004 KLKSQVTS 1011>XP_006717005 Length = 1788 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ELKTQVTS 8 +LK+QVTS Sbjct: 1032 KLKSQVTS 1039>XP_006717004 Length = 2240 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ELKTQVTS 8 +LK+QVTS Sbjct: 1584 KLKSQVTS 1591>XP_006717003 Length = 2278 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ELKTQVTS 8 +LK+QVTS Sbjct: 1584 KLKSQVTS 1591>XP_005251736 Length = 2325 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ELKTQVTS 8 +LK+QVTS Sbjct: 1584 KLKSQVTS 1591>NP_079390 Length = 2479 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 ELKTQV 6 ELKTQV Sbjct: 1786 ELKTQV 1791>NP_055497 Length = 1047 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 ELKTQVTS 8 +L+TQ+TS Sbjct: 949 KLQTQITS 956>NP_005024 Length = 439 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ELKTQVTSA 9 +++TQ TSA Sbjct: 410 KIRTQTTSA 418>NP_079490 Length = 335 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 ELKTQV 6 ELKTQV Sbjct: 294 ELKTQV 299>NP_001137301 Length = 335 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 ELKTQV 6 ELKTQV Sbjct: 294 ELKTQV 299>NP_005081 Length = 1012 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LKTQVT 7 LKTQVT Sbjct: 593 LKTQVT 598>NP_001029366 Length = 456 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ELKTQVTSA 9 +++TQ TSA Sbjct: 427 KIRTQTTSA 435>NP_061748 Length = 923 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ELKTQVTSA 9 EL+ QVT A Sbjct: 227 ELRIQVTDA 235>NP_115270 Length = 818 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ELKTQVTSA 9 EL+ QVT A Sbjct: 227 ELRIQVTDA 235>NP_001185517 Length = 893 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LKTQVT 7 LKTQVT Sbjct: 593 LKTQVT 598>XP_005266829 Length = 288 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 ELKTQV 6 ELKTQV Sbjct: 247 ELKTQV 252>XP_006722615 Length = 335 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 ELKTQV 6 ELKTQV Sbjct: 294 ELKTQV 299>XP_006719673 Length = 1997 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 ELKTQV 6 ELKTQV Sbjct: 1304 ELKTQV 1309>XP_005269218 Length = 2009 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 ELKTQV 6 ELKTQV Sbjct: 1316 ELKTQV 1321>XP_005269217 Length = 2353 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 ELKTQV 6 ELKTQV Sbjct: 1817 ELKTQV 1822>XP_006719672 Length = 2510 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 ELKTQV 6 ELKTQV Sbjct: 1817 ELKTQV 1822>XP_005269215 Length = 2510 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 ELKTQV 6 ELKTQV Sbjct: 1817 ELKTQV 1822>XP_006716553 Length = 965 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 ELKTQVTS 8 +L+TQ+TS Sbjct: 867 KLQTQITS 874>XP_006716552 Length = 1038 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 ELKTQVTS 8 +L+TQ+TS Sbjct: 949 KLQTQITS 956>XP_006716551 Length = 1047 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 ELKTQVTS 8 +L+TQ+TS Sbjct: 949 KLQTQITS 956>XP_006716550 Length = 1047 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 ELKTQVTS 8 +L+TQ+TS Sbjct: 949 KLQTQITS 956>NP_001108105 Length = 781 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LKTQVT 7 LKTQVT Sbjct: 362 LKTQVT 367Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.292 0.103 0.224 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 319,461 Number of extensions: 450 Number of successful extensions: 36 Number of sequences better than 10000.0: 33 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 36 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.1 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |