Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_065681 20 299 NP_066124 20 299 XP_006717999 20 299 NP_001171940 17 2528 NP_689512 17 2528 XP_005261969 17 2528 NP_775113 17 4312 NP_077320 17 4312 NP_775111 17 4312 NP_775110 17 4312 NP_775112 17 4312 NP_000061 17 4312 NP_055945 16 5631 NP_036330 16 5631 XP_005246503 16 5631 XP_006712464 16 5631 XP_006712463 16 5631 XP_006712462 16 5631 XP_006712461 16 5631 NP_036252 16 7355 NP_057209 16 7355 NP_001107033 16 7355 XP_005249034 16 7355 XP_005249033 16 7355 XP_006714654 16 7355 XP_006714653 16 7355 XP_006714652 16 7355 NP_001155899 15 9605 NP_000359 15 9605 NP_001155898 15 9605 NP_006747 15 9605 NP_001269848 15 9605 NP_001740 15 9605 NP_958845 15 9605 XP_005259354 15 9605 XP_005259353 15 9605 XP_005259352 15 9605 XP_006717334 15 9605 XP_005272268 15 9605 XP_006716530 15 9605 XP_005251248 15 9605 NP_001003962 15 9605>NP_065681 Length = 1072 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ELCRTMIAA 9 ELCRT+IAA Sbjct: 632 ELCRTVIAA 640>NP_066124 Length = 1114 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ELCRTMIAA 9 ELCRT+IAA Sbjct: 632 ELCRTVIAA 640>XP_006717999 Length = 1207 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ELCRTMIAA 9 ELCRT+IAA Sbjct: 725 ELCRTVIAA 733>NP_001171940 Length = 606 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 ELCRTMIAA 9 E+CR+M+A+ Sbjct: 549 EVCRSMLAS 557>NP_689512 Length = 605 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 ELCRTMIAA 9 E+CR+M+A+ Sbjct: 548 EVCRSMLAS 556>XP_005261969 Length = 579 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 ELCRTMIAA 9 E+CR+M+A+ Sbjct: 522 EVCRSMLAS 530>NP_775113 Length = 156 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ELCRTMIA 8 E CR+MIA Sbjct: 30 ESCRSMIA 37>NP_077320 Length = 815 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ELCRTMIA 8 E CR+MIA Sbjct: 689 ESCRSMIA 696>NP_775111 Length = 309 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ELCRTMIA 8 E CR+MIA Sbjct: 183 ESCRSMIA 190>NP_775110 Length = 729 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ELCRTMIA 8 E CR+MIA Sbjct: 603 ESCRSMIA 610>NP_775112 Length = 156 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ELCRTMIA 8 E CR+MIA Sbjct: 30 ESCRSMIA 37>NP_000061 Length = 821 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ELCRTMIA 8 E CR+MIA Sbjct: 695 ESCRSMIA 702>NP_055945 Length = 1266 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 ELCRTM 6 ELC+TM Sbjct: 1031 ELCKTM 1036>NP_036330 Length = 217 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 ELCRTMIA 8 E CR MIA Sbjct: 92 ETCRIMIA 99>XP_005246503 Length = 233 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 ELCRTMIA 8 E CR MIA Sbjct: 92 ETCRIMIA 99>XP_006712464 Length = 243 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 ELCRTMIA 8 E CR MIA Sbjct: 118 ETCRIMIA 125>XP_006712463 Length = 248 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 ELCRTMIA 8 E CR MIA Sbjct: 107 ETCRIMIA 114>XP_006712462 Length = 249 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 ELCRTMIA 8 E CR MIA Sbjct: 118 ETCRIMIA 125>XP_006712461 Length = 259 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 ELCRTMIA 8 E CR MIA Sbjct: 118 ETCRIMIA 125>NP_036252 Length = 639 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 ELCRTMIA 8 E CRT+ A Sbjct: 272 EYCRTLFA 279>NP_057209 Length = 435 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LCRTMIA 8 LCRT+I+ Sbjct: 411 LCRTVIS 417>NP_001107033 Length = 592 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LCRTMIA 8 LCRT+I+ Sbjct: 472 LCRTIIS 478>XP_005249034 Length = 607 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 ELCRTMIA 8 E CRT+ A Sbjct: 272 EYCRTLFA 279>XP_005249033 Length = 635 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 ELCRTMIA 8 E CRT+ A Sbjct: 268 EYCRTLFA 275>XP_006714654 Length = 537 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LCRTMIA 8 LCRT+I+ Sbjct: 472 LCRTIIS 478>XP_006714653 Length = 592 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LCRTMIA 8 LCRT+I+ Sbjct: 472 LCRTIIS 478>XP_006714652 Length = 592 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LCRTMIA 8 LCRT+I+ Sbjct: 472 LCRTIIS 478>NP_001155899 Length = 1113 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 ELCRTMIA 8 E CR MIA Sbjct: 750 EDCRNMIA 757>NP_000359 Length = 1164 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 ELCRTMIA 8 E CR MIA Sbjct: 801 EDCRNMIA 808>NP_001155898 Length = 1163 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 ELCRTMIA 8 E CR MIA Sbjct: 800 EDCRNMIA 807>NP_006747 Length = 301 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 CRTMIAA 9 CR M+AA Sbjct: 144 CREMLAA 150>NP_001269848 Length = 876 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 LCRTMIAA 9 LCRT+ A Sbjct: 852 LCRTLAVA 859>NP_001740 Length = 268 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 ELCRTMIA 8 + CR+M+A Sbjct: 142 DTCRSMVA 149>NP_958845 Length = 280 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 CRTMIAA 9 CR M+AA Sbjct: 123 CREMLAA 129>XP_005259354 Length = 156 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 ELCRTMIA 8 + CR+M+A Sbjct: 30 DTCRSMVA 37>XP_005259353 Length = 322 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 ELCRTMIA 8 + CR+M+A Sbjct: 142 DTCRSMVA 149>XP_005259352 Length = 322 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 ELCRTMIA 8 + CR+M+A Sbjct: 142 DTCRSMVA 149>XP_006717334 Length = 1164 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 ELCRTMIA 8 E CR MIA Sbjct: 801 EDCRNMIA 808>XP_005272268 Length = 1164 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 ELCRTMIA 8 E CR MIA Sbjct: 801 EDCRNMIA 808>XP_006716530 Length = 254 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 CRTMIAA 9 CR M+AA Sbjct: 97 CREMLAA 103>XP_005251248 Length = 848 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 LCRTMIAA 9 LCRT+ A Sbjct: 824 LCRTLAVA 831>NP_001003962 Length = 268 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 ELCRTMIA 8 + CR+M+A Sbjct: 142 DTCRSMVA 149Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.337 0.132 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 522,306 Number of extensions: 308 Number of successful extensions: 42 Number of sequences better than 10000.0: 42 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 42 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |