Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_542166 17 3301 NP_056357 17 3301 NP_001005234 17 3301 NP_001245135 15 9605 NP_001245136 15 9605 NP_005419 15 9605 NP_003451 15 9605 NP_001268451 15 9605 NP_001268449 15 9605 NP_877954 15 9605 NP_001268450 15 9605 NP_115874 15 9605 NP_001277033 15 9605 NP_001276091 15 9605 NP_005086 15 9605 XP_006721364 15 9605 XP_005255619 15 9605 XP_005271388 15 9605 XP_006711098 15 9605 XP_006711097 15 9605 XP_005271387 15 9605 XP_005271385 15 9605 NP_001276092 15 9605 NP_115645 15 9605>NP_542166 Length = 1272 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 EKRTISSAE 9 E+RT+SS E Sbjct: 27 ERRTVSSKE 35>NP_056357 Length = 1272 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 EKRTISSAE 9 E+RT+SS E Sbjct: 27 ERRTVSSKE 35>NP_001005234 Length = 324 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 EKRTISSAE 9 EK+TIS AE Sbjct: 88 EKKTISYAE 96>NP_001245135 Length = 823 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 EKRTIS 6 EKRTIS Sbjct: 747 EKRTIS 752>NP_001245136 Length = 813 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 EKRTIS 6 EKRTIS Sbjct: 737 EKRTIS 742>NP_005419 Length = 845 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 EKRTIS 6 EKRTIS Sbjct: 769 EKRTIS 774>NP_003451 Length = 745 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 EKRTISS 7 EKRT+S+ Sbjct: 738 EKRTVSN 744>NP_001268451 Length = 793 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 EKRTISSA 8 ++RTISSA Sbjct: 569 KQRTISSA 576>NP_001268449 Length = 840 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 EKRTISSA 8 ++RTISSA Sbjct: 616 KQRTISSA 623>NP_877954 Length = 824 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 EKRTISSA 8 ++RTISSA Sbjct: 600 KQRTISSA 607>NP_001268450 Length = 880 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 EKRTISSA 8 ++RTISSA Sbjct: 656 KQRTISSA 663>NP_115874 Length = 840 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 EKRTISSA 8 ++RTISSA Sbjct: 616 KQRTISSA 623>NP_001277033 Length = 736 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 EKRTISS 7 EKRT+S+ Sbjct: 729 EKRTVSN 735>NP_001276091 Length = 874 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 EKRTISSAE 9 +K T+SSAE Sbjct: 571 KKLTLSSAE 579>NP_005086 Length = 1548 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 EKRTISSAE 9 EK+T+S E Sbjct: 1059 EKKTLSQGE 1067>XP_006721364 Length = 831 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 EKRTISSAE 9 +K T+SSAE Sbjct: 528 KKLTLSSAE 536>XP_005255619 Length = 834 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 EKRTISS 7 EKRT+S+ Sbjct: 827 EKRTVSN 833>XP_005271388 Length = 1224 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 EKRTISSAE 9 EK+T+S E Sbjct: 735 EKKTLSQGE 743>XP_006711098 Length = 1516 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 EKRTISSAE 9 EK+T+S E Sbjct: 1027 EKKTLSQGE 1035>XP_006711097 Length = 1542 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 EKRTISSAE 9 EK+T+S E Sbjct: 1053 EKKTLSQGE 1061>XP_005271387 Length = 1545 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 EKRTISSAE 9 EK+T+S E Sbjct: 1056 EKKTLSQGE 1064>XP_005271385 Length = 1551 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 EKRTISSAE 9 EK+T+S E Sbjct: 1062 EKKTLSQGE 1070>NP_001276092 Length = 809 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 EKRTISSAE 9 +K T+SSAE Sbjct: 506 KKLTLSSAE 514>NP_115645 Length = 874 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 EKRTISSAE 9 +K T+SSAE Sbjct: 571 KKLTLSSAE 579Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.286 0.102 0.218 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 347,563 Number of extensions: 307 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (14.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |