Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115803 20 509 NP_076927 17 3301 NP_683692 17 3301 NP_115780 17 3301 NP_001243246 17 3301 XP_005248208 17 3301 XP_005248207 17 3301 XP_006714021 17 3301 NP_001088 17 3301 NP_115781 17 3301 NP_001182068 16 5631 NP_056201 16 5631 NP_002652 16 5631 NP_596870 16 5631 XP_006721237 16 5631 NP_001182180 15 9605 NP_778239 15 9605 NP_001182181 15 9605 NP_036547 15 9605 NP_001192192 15 9605 NP_001128527 15 9605 NP_001244957 15 9605 NP_001055 15 9605 NP_004059 15 9605 NP_001020376 15 9605 NP_001182183 15 9605 NP_001274693 15 9605 NP_001182178 15 9605 NP_055207 15 9605 NP_778243 15 9605 NP_001182179 15 9605 NP_001274692 15 9605 NP_001035190 15 9605 NP_001182177 15 9605 NP_001008781 15 9605 XP_006716855 15 9605 XP_006716854 15 9605 XP_006713382 15 9605>NP_115803 Length = 1156 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 EKIVIKSKY 9 EKIVIKS+Y Sbjct: 360 EKIVIKSEY 368>NP_076927 Length = 454 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 EKIVIKSKY 9 EKIV SKY Sbjct: 288 EKIVYHSKY 296>NP_683692 Length = 3051 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 EKIVIKSK 8 EK+V+KSK Sbjct: 906 EKLVLKSK 913>NP_115780 Length = 327 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 EKIVIKSKY 9 EKIV SKY Sbjct: 161 EKIVYHSKY 169>NP_001243246 Length = 453 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 EKIVIKSKY 9 EKIV SKY Sbjct: 288 EKIVYHSKY 296>XP_005248208 Length = 3097 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 EKIVIKSK 8 EK+V+KSK Sbjct: 906 EKLVLKSK 913>XP_005248207 Length = 3098 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 EKIVIKSK 8 EK+V+KSK Sbjct: 906 EKLVLKSK 913>XP_006714021 Length = 3112 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 EKIVIKSK 8 EK+V+KSK Sbjct: 906 EKLVLKSK 913>NP_001088 Length = 421 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 EKIVIKSKY 9 EKI+I KY Sbjct: 126 EKIIIHEKY 134>NP_115781 Length = 344 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 EKIVIKSKY 9 EKIV SKY Sbjct: 288 EKIVYHSKY 296>NP_001182068 Length = 768 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EKIVIKSKY 9 EK+V+KS + Sbjct: 671 EKVVLKSTF 679>NP_056201 Length = 789 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EKIVIKSKY 9 EK+V+KS + Sbjct: 692 EKVVLKSTF 700>NP_002652 Length = 1265 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 EKIVIKSK 8 EKI+IK K Sbjct: 449 EKIIIKHK 456>NP_596870 Length = 5604 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EKIVIKSKY 9 E++V+KS Y Sbjct: 5492 EELVLKSNY 5500>XP_006721237 Length = 647 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EKIVIKSKY 9 EK+V+KS + Sbjct: 550 EKVVLKSTF 558>NP_001182180 Length = 292 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 IVIKSKY 9 +VIK KY Sbjct: 189 VVIKDKY 195>NP_778239 Length = 306 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 IVIKSKY 9 +VIK KY Sbjct: 203 VVIKDKY 209>NP_001182181 Length = 284 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 IVIKSKY 9 +VIK KY Sbjct: 131 VVIKDKY 137>NP_036547 Length = 910 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 EKIVIKSKY 9 EK+V+ S Y Sbjct: 661 EKVVLVSNY 669>NP_001192192 Length = 726 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 EKIVIKSKY 9 EK+V+ S Y Sbjct: 477 EKVVLVSNY 485>NP_001128527 Length = 623 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 KIVIKSK 8 K+V+KSK Sbjct: 493 KVVLKSK 499>NP_001244957 Length = 631 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 KIVIKSK 8 K+V+KSK Sbjct: 501 KVVLKSK 507>NP_001055 Length = 623 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 KIVIKSK 8 K+V+KSK Sbjct: 493 KVVLKSK 499>NP_004059 Length = 435 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KIVIKSKY 9 K+VIKS + Sbjct: 304 KVVIKSNF 311>NP_001020376 Length = 433 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KIVIKSKY 9 K+VIKS + Sbjct: 302 KVVIKSNF 309>NP_001182183 Length = 288 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 IVIKSKY 9 +VIK KY Sbjct: 135 VVIKDKY 141>NP_001274693 Length = 158 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 EKIVIKSK 8 +K+V+K+K Sbjct: 15 DKVVVKTK 22>NP_001182178 Length = 342 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 IVIKSKY 9 +VIK KY Sbjct: 189 VVIKDKY 195>NP_055207 Length = 185 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 EKIVIKSK 8 +K+V+K+K Sbjct: 42 DKVVVKTK 49>NP_778243 Length = 342 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 IVIKSKY 9 +VIK KY Sbjct: 189 VVIKDKY 195>NP_001182179 Length = 302 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 IVIKSKY 9 +VIK KY Sbjct: 149 VVIKDKY 155>NP_001274692 Length = 185 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 EKIVIKSK 8 +K+V+K+K Sbjct: 42 DKVVVKTK 49>NP_001035190 Length = 185 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 EKIVIKSK 8 +K+V+K+K Sbjct: 42 DKVVVKTK 49>NP_001182177 Length = 356 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 IVIKSKY 9 +VIK KY Sbjct: 203 VVIKDKY 209>NP_001008781 Length = 4557 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 EKIVIKSK 8 EK++IK+K Sbjct: 694 EKLLIKAK 701>XP_006716855 Length = 254 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 IVIKSKY 9 +VIK KY Sbjct: 101 VVIKDKY 107>XP_006716854 Length = 342 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 IVIKSKY 9 +VIK KY Sbjct: 189 VVIKDKY 195>XP_006713382 Length = 630 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 KIVIKSK 8 K+V+KSK Sbjct: 493 KVVLKSK 499Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.312 0.132 0.320 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 394,559 Number of extensions: 710 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |