Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006209 20 509 XP_006713721 20 509 NP_001035545 18 1482 NP_116147 17 2528 NP_060169 17 2528 XP_006713743 17 2528 XP_005247615 17 2528 XP_006713740 17 2528 XP_006713739 17 2528 XP_006713738 17 2528 NP_036419 17 3301 XP_006713621 17 3301 XP_006713620 17 3301 NP_004454 17 4312 NP_001810 16 5631 NP_004271 16 5631 NP_061026 16 5631 XP_005260806 16 5631 NP_060357 16 7355 NP_004514 16 7355 NP_689777 16 7355 NP_060360 16 7355 NP_005373 16 7355 XP_005250858 16 7355 XP_005250857 16 7355 NP_071933 15 9605 NP_001265641 15 9605 NP_001269723 15 9605 NP_055705 15 9605 NP_001035924 15 9605 NP_878913 15 9605 NP_001363 15 9605 XP_006721530 15 9605 XP_006721529 15 9605 XP_006721528 15 9605 XP_006719839 15 9605 XP_005249373 15 9605 XP_006713549 15 9605 NP_699202 15 9605>NP_006209 Length = 1068 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EITVQEKDF 9 EIT QEKDF Sbjct: 542 EITEQEKDF 550>XP_006713721 Length = 1068 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EITVQEKDF 9 EIT QEKDF Sbjct: 542 EITEQEKDF 550>NP_001035545 Length = 832 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 ITVQEKDF 9 ITVQ KDF Sbjct: 231 ITVQRKDF 238>NP_116147 Length = 110 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 EITVQEKD 8 E T+QEKD Sbjct: 74 ECTIQEKD 81>NP_060169 Length = 827 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 ITVQEKDF 9 IT+Q+KDF Sbjct: 246 ITLQKKDF 253>XP_006713743 Length = 424 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 ITVQEKDF 9 IT+Q+KDF Sbjct: 246 ITLQKKDF 253>XP_005247615 Length = 832 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 ITVQEKDF 9 IT+Q+KDF Sbjct: 246 ITLQKKDF 253>XP_006713740 Length = 848 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 ITVQEKDF 9 IT+Q+KDF Sbjct: 246 ITLQKKDF 253>XP_006713739 Length = 849 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 ITVQEKDF 9 IT+Q+KDF Sbjct: 246 ITLQKKDF 253>XP_006713738 Length = 853 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 ITVQEKDF 9 IT+Q+KDF Sbjct: 246 ITLQKKDF 253>NP_036419 Length = 778 Score = 16.9 bits (32), Expect = 3301 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TVQEKDF 9 T+Q+KDF Sbjct: 244 TIQQKDF 250>XP_006713621 Length = 622 Score = 16.9 bits (32), Expect = 3301 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TVQEKDF 9 T+Q+KDF Sbjct: 244 TIQQKDF 250>XP_006713620 Length = 785 Score = 16.9 bits (32), Expect = 3301 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TVQEKDF 9 T+Q+KDF Sbjct: 244 TIQQKDF 250>NP_004454 Length = 961 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 EITVQEKDF 9 E+TVQ+K F Sbjct: 367 ELTVQQKVF 375>NP_001810 Length = 677 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EITVQEKDF 9 E+T+ EK+F Sbjct: 554 ELTLNEKNF 562>NP_004271 Length = 174 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 EITVQEKD 8 ++TVQEK+ Sbjct: 130 DLTVQEKE 137>NP_061026 Length = 387 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 EITVQEKD 8 E+TV +KD Sbjct: 346 EVTVHQKD 353>XP_005260806 Length = 281 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 EITVQEKD 8 E+TV +KD Sbjct: 240 EVTVHQKD 247>NP_060357 Length = 160 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EITVQEKDF 9 +I +QEKD+ Sbjct: 129 DINLQEKDW 137>NP_004514 Length = 1056 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 EITVQEKD 8 EITV KD Sbjct: 201 EITVHNKD 208>NP_689777 Length = 3997 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ITVQEKDF 9 IT+Q KDF Sbjct: 2004 ITLQIKDF 2011>NP_060360 Length = 4022 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ITVQEKDF 9 IT+Q KDF Sbjct: 2029 ITLQIKDF 2036>NP_005373 Length = 916 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 ITVQEKDF 9 ITV+ KD+ Sbjct: 254 ITVERKDY 261>XP_005250858 Length = 4022 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ITVQEKDF 9 IT+Q KDF Sbjct: 2029 ITLQIKDF 2036>XP_005250857 Length = 4022 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ITVQEKDF 9 IT+Q KDF Sbjct: 2029 ITLQIKDF 2036>NP_071933 Length = 314 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 EITVQEKD 8 EIT++ KD Sbjct: 125 EITLENKD 132>NP_001265641 Length = 311 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 EITVQEKD 8 EIT++ KD Sbjct: 125 EITLENKD 132>NP_001269723 Length = 895 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 TVQEKDF 9 T+Q KDF Sbjct: 167 TLQSKDF 173>NP_055705 Length = 893 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 TVQEKDF 9 T+Q KDF Sbjct: 167 TLQSKDF 173>NP_001035924 Length = 1133 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 TVQEKDF 9 T+Q KDF Sbjct: 407 TLQSKDF 413>NP_878913 Length = 1135 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 TVQEKDF 9 T+Q KDF Sbjct: 407 TLQSKDF 413>NP_001363 Length = 4486 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VQEKDF 9 V+EKDF Sbjct: 2720 VEEKDF 2725>XP_006721530 Length = 2746 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VQEKDF 9 V+EKDF Sbjct: 2720 VEEKDF 2725>XP_006721529 Length = 2817 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VQEKDF 9 V+EKDF Sbjct: 2720 VEEKDF 2725>XP_006721528 Length = 3869 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VQEKDF 9 V+EKDF Sbjct: 2720 VEEKDF 2725>XP_006719839 Length = 567 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VQEKDF 9 +QEKDF Sbjct: 78 LQEKDF 83>XP_005249373 Length = 7723 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 EITVQEK 7 EIT QEK Sbjct: 167 EITFQEK 173>XP_006713549 Length = 893 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 TVQEKDF 9 T+Q KDF Sbjct: 167 TLQSKDF 173>NP_699202 Length = 690 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 VQEKDF 9 +QEKDF Sbjct: 78 LQEKDF 83Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.312 0.133 0.337 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 669,077 Number of extensions: 1133 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |