Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001138390 18 1482 NP_001138386 18 1482 NP_001138387 18 1482 NP_000132 18 1482 NP_075259 18 1482 NP_001138388 18 1482 NP_001138391 18 1482 NP_001138385 18 1482 NP_075418 18 1482 XP_006717776 18 1482 XP_006717775 18 1482 XP_006717774 18 1482 XP_006717773 18 1482 XP_006717772 18 1482 XP_006717771 18 1482 NP_001273145 16 7355 NP_061969 16 7355 XP_006721609 16 7355 XP_006715187 16 7355 NP_036525 16 7355 NP_740754 15 9605 NP_061336 15 9605 NP_001012680 15 9605 NP_001012682 15 9605 NP_002385 15 9605 NP_001013269 15 9605 NP_001014 15 9605 NP_001139699 15 9605>NP_001138390 Length = 704 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EIAIYRIGV 9 EIAIY IGV Sbjct: 262 EIAIYCIGV 270>NP_001138386 Length = 709 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EIAIYRIGV 9 EIAIY IGV Sbjct: 265 EIAIYCIGV 273>NP_001138387 Length = 707 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EIAIYRIGV 9 EIAIY IGV Sbjct: 288 EIAIYCIGV 296>NP_000132 Length = 821 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EIAIYRIGV 9 EIAIY IGV Sbjct: 377 EIAIYCIGV 385>NP_075259 Length = 822 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EIAIYRIGV 9 EIAIY IGV Sbjct: 378 EIAIYCIGV 386>NP_001138388 Length = 706 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EIAIYRIGV 9 EIAIY IGV Sbjct: 262 EIAIYCIGV 270>NP_001138391 Length = 680 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EIAIYRIGV 9 EIAIY IGV Sbjct: 289 EIAIYCIGV 297>NP_001138385 Length = 769 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EIAIYRIGV 9 EIAIY IGV Sbjct: 378 EIAIYCIGV 386>NP_075418 Length = 732 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EIAIYRIGV 9 EIAIY IGV Sbjct: 288 EIAIYCIGV 296>XP_006717776 Length = 806 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EIAIYRIGV 9 EIAIY IGV Sbjct: 396 EIAIYCIGV 404>XP_006717775 Length = 726 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EIAIYRIGV 9 EIAIY IGV Sbjct: 282 EIAIYCIGV 290>XP_006717774 Length = 752 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EIAIYRIGV 9 EIAIY IGV Sbjct: 308 EIAIYCIGV 316>XP_006717773 Length = 807 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EIAIYRIGV 9 EIAIY IGV Sbjct: 397 EIAIYCIGV 405>XP_006717772 Length = 838 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EIAIYRIGV 9 EIAIY IGV Sbjct: 396 EIAIYCIGV 404>XP_006717771 Length = 839 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EIAIYRIGV 9 EIAIY IGV Sbjct: 397 EIAIYCIGV 405>NP_001273145 Length = 514 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AIYRIGV 9 A+Y+IGV Sbjct: 12 AVYQIGV 18>NP_061969 Length = 602 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AIYRIGV 9 A+Y+IGV Sbjct: 100 AVYQIGV 106>XP_006721609 Length = 947 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 IYRIGV 9 +YRIGV Sbjct: 456 VYRIGV 461>XP_006715187 Length = 554 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 AIYRIGV 9 A+Y+IGV Sbjct: 52 AVYQIGV 58>NP_036525 Length = 1338 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 IYRIGV 9 +YRIGV Sbjct: 456 VYRIGV 461>NP_740754 Length = 570 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 IAIYRIGV 9 IAI RIGV Sbjct: 311 IAIDRIGV 318>NP_061336 Length = 570 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 IAIYRIGV 9 IAI RIGV Sbjct: 311 IAIDRIGV 318>NP_001012680 Length = 631 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AIYRIG 8 A+YRIG Sbjct: 224 ALYRIG 229>NP_001012682 Length = 568 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AIYRIG 8 A+YRIG Sbjct: 161 ALYRIG 166>NP_002385 Length = 630 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AIYRIG 8 A+YRIG Sbjct: 223 ALYRIG 228>NP_001013269 Length = 529 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 AIYRIG 8 A+YRIG Sbjct: 122 ALYRIG 127>NP_001014 Length = 119 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EIAIYRIGV 9 E+AI+RI + Sbjct: 14 EVAIHRIRI 22>NP_001139699 Length = 142 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EIAIYRIGV 9 E+AI+RI + Sbjct: 14 EVAIHRIRI 22Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.334 0.158 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 374,236 Number of extensions: 464 Number of successful extensions: 28 Number of sequences better than 10000.0: 28 Number of HSP's gapped: 28 Number of HSP's successfully gapped: 28 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |