Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001167558 18 1935 NP_858045 18 1935 NP_006525 18 1935 NP_001167559 18 1935 NP_079421 17 2528 XP_005270233 17 2528 XP_005270232 17 2528 XP_005270231 17 2528 XP_005270230 17 2528 XP_005270229 17 2528 XP_005270228 17 2528 NP_066564 16 5631 NP_065961 16 5631 NP_001158137 16 5631 XP_006721881 16 5631 XP_006721880 16 5631 XP_006716134 16 5631 NP_001073896 15 9605 NP_036397 15 9605 XP_006724287 15 9605 XP_005261561 15 9605 XP_005263859 15 9605>NP_001167558 Length = 1423 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EGVETSLLS 9 EGV TSLLS Sbjct: 531 EGVGTSLLS 539>NP_858045 Length = 1424 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EGVETSLLS 9 EGV TSLLS Sbjct: 531 EGVGTSLLS 539>NP_006525 Length = 1420 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EGVETSLLS 9 EGV TSLLS Sbjct: 531 EGVGTSLLS 539>NP_001167559 Length = 1415 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EGVETSLLS 9 EGV TSLLS Sbjct: 541 EGVGTSLLS 549>NP_079421 Length = 1665 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 GVETSLLS 9 GV+TSLLS Sbjct: 987 GVDTSLLS 994>XP_005270233 Length = 927 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 GVETSLLS 9 GV+TSLLS Sbjct: 249 GVDTSLLS 256>XP_005270232 Length = 1535 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 GVETSLLS 9 GV+TSLLS Sbjct: 988 GVDTSLLS 995>XP_005270231 Length = 1627 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 GVETSLLS 9 GV+TSLLS Sbjct: 949 GVDTSLLS 956>XP_005270230 Length = 1627 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 GVETSLLS 9 GV+TSLLS Sbjct: 949 GVDTSLLS 956>XP_005270229 Length = 1637 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 GVETSLLS 9 GV+TSLLS Sbjct: 988 GVDTSLLS 995>XP_005270228 Length = 1666 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 GVETSLLS 9 GV+TSLLS Sbjct: 988 GVDTSLLS 995>NP_066564 Length = 837 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 GVETSLLS 9 G ETSLLS Sbjct: 474 GPETSLLS 481>NP_065961 Length = 1934 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 EGVETSL 7 EGVET+L Sbjct: 275 EGVETTL 281>NP_001158137 Length = 1950 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 EGVETSL 7 EGVET+L Sbjct: 275 EGVETTL 281>XP_006721881 Length = 477 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 GVETSLLS 9 G ETSLLS Sbjct: 113 GPETSLLS 120>XP_006721880 Length = 838 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 GVETSLLS 9 G ETSLLS Sbjct: 474 GPETSLLS 481>XP_006716134 Length = 1847 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 EGVETSL 7 EGVET+L Sbjct: 199 EGVETTL 205>NP_001073896 Length = 1577 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 EGVETSLLS 9 +GV T LLS Sbjct: 1174 QGVRTRLLS 1182>NP_036397 Length = 386 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 EGVETSLL 8 EG++ SLL Sbjct: 299 EGIQASLL 306>XP_006724287 Length = 258 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 EGVETSLL 8 EG++ SLL Sbjct: 171 EGIQASLL 178>XP_005261561 Length = 389 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 EGVETSLL 8 EG++ SLL Sbjct: 302 EGIQASLL 309>XP_005263859 Length = 1606 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 EGVETSLLS 9 +GV T LLS Sbjct: 1203 QGVRTRLLS 1211Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.293 0.118 0.272 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 405,650 Number of extensions: 629 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (14.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |