Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000258 18 1135 NP_001035957 18 1135 XP_006721991 18 1135 XP_006721990 18 1135 XP_006721989 18 1135 XP_005258041 18 1135 XP_006721988 18 1135 XP_006721987 18 1135 XP_006721986 18 1135 XP_005258040 18 1135 XP_006721985 18 1135 NP_006002 17 3301 NP_001004441 16 7355 XP_006714662 16 7355 NP_001275514 15 9605 NP_741982 15 9605 NP_203744 15 9605 NP_116246 15 9605 XP_006724408 15 9605 XP_005261849 15 9605 XP_005261848 15 9605 XP_005254200 15 9605 NP_001005326 15 9605>NP_000258 Length = 2818 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EFKALKMLS 9 EFKALK LS Sbjct: 1562 EFKALKTLS 1570>NP_001035957 Length = 2839 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EFKALKMLS 9 EFKALK LS Sbjct: 1583 EFKALKTLS 1591>XP_006721991 Length = 1632 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EFKALKMLS 9 EFKALK LS Sbjct: 1593 EFKALKTLS 1601>XP_006721990 Length = 2823 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EFKALKMLS 9 EFKALK LS Sbjct: 1593 EFKALKTLS 1601>XP_006721989 Length = 2823 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EFKALKMLS 9 EFKALK LS Sbjct: 1593 EFKALKTLS 1601>XP_005258041 Length = 2836 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EFKALKMLS 9 EFKALK LS Sbjct: 1562 EFKALKTLS 1570>XP_006721988 Length = 2846 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EFKALKMLS 9 EFKALK LS Sbjct: 1572 EFKALKTLS 1580>XP_006721987 Length = 2849 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EFKALKMLS 9 EFKALK LS Sbjct: 1593 EFKALKTLS 1601>XP_006721986 Length = 2854 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EFKALKMLS 9 EFKALK LS Sbjct: 1580 EFKALKTLS 1588>XP_005258040 Length = 2857 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EFKALKMLS 9 EFKALK LS Sbjct: 1583 EFKALKTLS 1591>XP_006721985 Length = 2867 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EFKALKMLS 9 EFKALK LS Sbjct: 1593 EFKALKTLS 1601>NP_006002 Length = 375 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 EFKALKML 8 EFKALK L Sbjct: 351 EFKALKSL 358>NP_001004441 Length = 514 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 EFKALKML 8 EFK+ KML Sbjct: 490 EFKSKKML 497>XP_006714662 Length = 514 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 EFKALKML 8 EFK+ KML Sbjct: 490 EFKSKKML 497>NP_001275514 Length = 332 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FKALKML 8 +KALKM+ Sbjct: 236 YKALKMM 242>NP_741982 Length = 373 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FKALKML 8 +KALKM+ Sbjct: 236 YKALKMM 242>NP_203744 Length = 863 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 EFKALKML 8 +FK +KML Sbjct: 838 KFKTMKML 845>NP_116246 Length = 547 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FKALKML 8 +KALKM+ Sbjct: 236 YKALKMM 242>XP_006724408 Length = 788 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 EFKALKML 8 +FK +KML Sbjct: 763 KFKTMKML 770>XP_005261849 Length = 870 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 EFKALKML 8 +FK +KML Sbjct: 845 KFKTMKML 852>XP_005261848 Length = 872 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 EFKALKML 8 +FK +KML Sbjct: 847 KFKTMKML 854>XP_005254200 Length = 374 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 FKALKML 8 +KALKM+ Sbjct: 236 YKALKMM 242>NP_001005326 Length = 312 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 FKALKMLS 9 FKA MLS Sbjct: 234 FKAFSMLS 241Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.324 0.131 0.318 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 269,303 Number of extensions: 300 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |