Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 18 1935 XP_005262424 18 1935 NP_001093321 17 2528 NP_001038945 17 2528 NP_071900 16 5631 NP_001230175 16 5631 XP_006714967 16 5631 XP_006714966 16 5631 XP_006714964 16 5631 XP_005266016 16 5631 NP_001269316 16 7355 NP_005887 16 7355 NP_001269315 16 7355 NP_001159756 16 7355 NP_006420 16 7355 NP_001009570 16 7355 NP_001159757 16 7355 NP_001271203 16 7355 NP_877497 16 7355 XP_005269612 16 7355 NP_055093 15 9605 NP_775871 15 9605 XP_006714203 15 9605>NP_722576 Length = 3080 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EETSTNALS 9 EETST ALS Sbjct: 1178 EETSTYALS 1186>XP_005262424 Length = 2875 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EETSTNALS 9 EETST ALS Sbjct: 973 EETSTYALS 981>NP_001093321 Length = 474 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 ETSTNAL 8 ETSTNAL Sbjct: 388 ETSTNAL 394>NP_001038945 Length = 474 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 ETSTNAL 8 ETSTNAL Sbjct: 388 ETSTNAL 394>NP_071900 Length = 2696 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 EETSTNA 7 EET TNA Sbjct: 185 EETQTNA 191>NP_001230175 Length = 804 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 ETSTNALS 9 +TS+NALS Sbjct: 728 DTSSNALS 735>XP_006714967 Length = 1327 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 EETSTNA 7 EET TNA Sbjct: 185 EETQTNA 191>XP_006714966 Length = 1499 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 EETSTNA 7 EET TNA Sbjct: 185 EETQTNA 191>XP_006714964 Length = 2696 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 EETSTNA 7 EET TNA Sbjct: 185 EETQTNA 191>XP_005266016 Length = 2696 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 EETSTNA 7 EET TNA Sbjct: 185 EETQTNA 191>NP_001269316 Length = 414 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EETSTNALS 9 +ETSTN ++ Sbjct: 323 QETSTNPIA 331>NP_005887 Length = 414 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EETSTNALS 9 +ETSTN ++ Sbjct: 323 QETSTNPIA 331>NP_001269315 Length = 414 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EETSTNALS 9 +ETSTN ++ Sbjct: 323 QETSTNPIA 331>NP_001159756 Length = 456 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ETSTNALS 9 +TS NALS Sbjct: 244 QTSVNALS 251>NP_006420 Length = 543 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ETSTNALS 9 +TS NALS Sbjct: 331 QTSVNALS 338>NP_001009570 Length = 339 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ETSTNALS 9 +TS NALS Sbjct: 127 QTSVNALS 134>NP_001159757 Length = 499 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ETSTNALS 9 +TS NALS Sbjct: 287 QTSVNALS 294>NP_001271203 Length = 780 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 ETSTNAL 8 ETSTN L Sbjct: 736 ETSTNCL 742>NP_877497 Length = 776 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 ETSTNAL 8 ETSTN L Sbjct: 732 ETSTNCL 738>XP_005269612 Length = 669 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 ETSTNAL 8 ETSTN L Sbjct: 625 ETSTNCL 631>NP_055093 Length = 839 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 EETSTNAL 8 +ETS NAL Sbjct: 126 KETSENAL 133>NP_775871 Length = 8384 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TSTNALS 9 T TNALS Sbjct: 5250 TGTNALS 5256>XP_006714203 Length = 543 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 EETSTNAL 8 +ETS NAL Sbjct: 126 KETSENAL 133Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.270 0.0899 0.192 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 344,610 Number of extensions: 376 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 18 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (14.4 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |