Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005912 19 869 XP_005248577 19 869 XP_005248576 19 869 NP_733936 18 1935 NP_001071 18 1935 NP_899059 17 3301 NP_899057 17 3301 NP_004571 17 3301 NP_899058 17 3301 XP_005254634 17 3301 XP_005254633 17 3301 NP_036424 17 4312 NP_001269263 17 4312 NP_001269264 17 4312 NP_001245257 17 4312 XP_006722776 17 4312 NP_004477 16 5631 XP_005251989 16 5631 XP_005251988 16 5631 XP_005251987 16 5631 NP_000929 16 7355 NP_000114 15 9605 NP_001186623 15 9605 NP_001186622 15 9605 NP_001186621 15 9605 NP_001191354 15 9605 NP_003031 15 9605 XP_006716157 15 9605 XP_006711990 15 9605>NP_005912 Length = 1512 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 EEEAVAIAM 9 EEEA+AIAM Sbjct: 1185 EEEALAIAM 1193>XP_005248577 Length = 1349 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 EEEAVAIAM 9 EEEA+AIAM Sbjct: 1022 EEEALAIAM 1030>XP_005248576 Length = 1375 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 EEEAVAIAM 9 EEEA+AIAM Sbjct: 1048 EEEALAIAM 1056>NP_733936 Length = 548 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 EEEAVAIA 8 EEEA+AIA Sbjct: 465 EEEAIAIA 472>NP_001071 Length = 535 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 EEEAVAIA 8 EEEA+AIA Sbjct: 452 EEEAIAIA 459>NP_899059 Length = 221 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 EEEAVAIA 8 EEEA+A+A Sbjct: 145 EEEAIALA 152>NP_899057 Length = 221 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 EEEAVAIA 8 EEEA+A+A Sbjct: 145 EEEAIALA 152>NP_004571 Length = 221 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 EEEAVAIA 8 EEEA+A+A Sbjct: 145 EEEAIALA 152>NP_899058 Length = 221 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 EEEAVAIA 8 EEEA+A+A Sbjct: 145 EEEAIALA 152>XP_005254634 Length = 168 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 EEEAVAIA 8 EEEA+A+A Sbjct: 145 EEEAIALA 152>XP_005254633 Length = 221 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 EEEAVAIA 8 EEEA+A+A Sbjct: 145 EEEAIALA 152>NP_036424 Length = 1136 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 EEEAVAIAM 9 E EAVA+A+ Sbjct: 879 ESEAVAVAL 887>NP_001269263 Length = 771 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 EEEAVAIAM 9 E EAVA+A+ Sbjct: 514 ESEAVAVAL 522>NP_001269264 Length = 1019 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 EEEAVAIAM 9 E EAVA+A+ Sbjct: 762 ESEAVAVAL 770>NP_001245257 Length = 1152 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 EEEAVAIAM 9 E EAVA+A+ Sbjct: 895 ESEAVAVAL 903>XP_006722776 Length = 1164 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 EEEAVAIAM 9 E EAVA+A+ Sbjct: 907 ESEAVAVAL 915>NP_004477 Length = 1002 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 EEEAVAI 7 EEEAVA+ Sbjct: 713 EEEAVAV 719>XP_005251989 Length = 975 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 EEEAVAI 7 EEEAVA+ Sbjct: 686 EEEAVAV 692>XP_005251988 Length = 1002 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 EEEAVAI 7 EEEAVA+ Sbjct: 713 EEEAVAV 719>XP_005251987 Length = 1029 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 EEEAVAI 7 EEEAVA+ Sbjct: 740 EEEAVAV 746>NP_000929 Length = 1174 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 EEEAVAIAM 9 EEE V +AM Sbjct: 669 EEETVMLAM 677>NP_000114 Length = 1186 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 EEEAVAIAM 9 E EAV++AM Sbjct: 1033 EIEAVSVAM 1041>NP_001186623 Length = 1227 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 EEEAVAIA 8 E EAVA+A Sbjct: 186 EAEAVAVA 193>NP_001186622 Length = 1232 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 EEEAVAIA 8 E EAVA+A Sbjct: 191 EAEAVAVA 198>NP_001186621 Length = 1241 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 EEEAVAIA 8 E EAVA+A Sbjct: 200 EAEAVAVA 207>NP_001191354 Length = 1640 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 EEEAVAIAM 9 E EAV++AM Sbjct: 1487 EIEAVSVAM 1495>NP_003031 Length = 1241 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 EEEAVAIA 8 E EAVA+A Sbjct: 200 EAEAVAVA 207>XP_006716157 Length = 666 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 EEEAVAIA 8 E EAVA+A Sbjct: 200 EAEAVAVA 207>XP_006711990 Length = 1131 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 EEEAVAIA 8 EE+AVA++ Sbjct: 1122 EEQAVAVS 1129Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.302 0.114 0.247 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 491,756 Number of extensions: 669 Number of successful extensions: 29 Number of sequences better than 10000.0: 29 Number of HSP's gapped: 29 Number of HSP's successfully gapped: 29 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |