Cancertope

In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer

Blast-Search of mutated query peptide against human proteome

BLAST Search Results
BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_073713                                                              19     665
NP_699161                                                              17    4312
NP_006727                                                              17    4312
NP_001034639                                                           17    4312
XP_006713582                                                           17    4312
NP_002882                                                              16    5631
NP_001139120                                                           16    5631
NP_001269323                                                           16    5631
NP_006639                                                              16    5631
XP_006720692                                                           16    5631
XP_006720691                                                           16    5631
XP_006720690                                                           16    5631
XP_005254635                                                           16    5631
XP_006717302                                                           16    5631
XP_005252201                                                           16    5631
XP_005252200                                                           16    5631
XP_006717301                                                           16    5631
XP_005252199                                                           16    5631
XP_005252198                                                           16    5631
XP_005252197                                                           16    5631
XP_006717300                                                           16    5631
XP_005252196                                                           16    5631
XP_005252195                                                           16    5631
XP_005252194                                                           16    5631
NP_001136277                                                           16    7355
NP_001136278                                                           16    7355
NP_005620                                                              16    7355
NP_005490                                                              16    7355
NP_001129491                                                           16    7355
NP_001186226                                                           16    7355
NP_004098                                                              16    7355
NP_057374                                                              16    7355
NP_056392                                                              16    7355
NP_001138997                                                           16    7355
NP_001138995                                                           16    7355
NP_001138994                                                           16    7355
NP_001138993                                                           16    7355
NP_001138992                                                           16    7355
NP_001186227                                                           16    7355
XP_006723149                                                           16    7355
XP_005258714                                                           16    7355
XP_005258461                                                           16    7355
XP_005258460                                                           16    7355
XP_006723025                                                           16    7355
XP_006720765                                                           16    7355
XP_005265993                                                           16    7355
XP_006714937                                                           16    7355
XP_005265992                                                           16    7355
XP_005265991                                                           16    7355
XP_005265990                                                           16    7355
XP_005265989                                                           16    7355
XP_006714936                                                           16    7355
XP_006714935                                                           16    7355
XP_005265988                                                           16    7355
XP_006714934                                                           16    7355
XP_005265987                                                           16    7355
XP_006714532                                                           16    7355
NP_490647                                                              15    9605
NP_005485                                                              15    9605
NP_001069                                                              15    9605
NP_001186763                                                           15    9605
NP_542413                                                              15    9605
NP_631896                                                              15    9605
NP_005409                                                              15    9605
NP_998783                                                              15    9605
XP_005253141                                                           15    9605
XP_005253140                                                           15    9605
XP_005253138                                                           15    9605
XP_005253137                                                           15    9605
XP_005253136                                                           15    9605
XP_006718348                                                           15    9605
XP_006718347                                                           15    9605
XP_005253134                                                           15    9605
XP_006715886                                                           15    9605
XP_005249573                                                           15    9605
XP_005249572                                                           15    9605
>NP_073713
          Length = 985

 Score = 19.2 bits (38), Expect =   665
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1   EDADIKSV 8
           EDADIKSV
Sbjct: 325 EDADIKSV 332
>NP_699161
          Length = 232

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   EDADIKSVT 9
           ED  +KSVT
Sbjct: 211 EDGQLKSVT 219
>NP_006727
          Length = 324

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   EDADIKSVT 9
           ED  +KSVT
Sbjct: 196 EDGQLKSVT 204
>NP_001034639
          Length = 277

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   EDADIKSVT 9
           ED  +KSVT
Sbjct: 196 EDGQLKSVT 204
>XP_006713582
          Length = 232

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   EDADIKSVT 9
           ED  +KSVT
Sbjct: 211 EDGQLKSVT 219
>NP_002882
          Length = 1273

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   EDADIKSV 8
           ED+DIK +
Sbjct: 199 EDSDIKKI 206
>NP_001139120
          Length = 1257

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   EDADIKSV 8
           ED+DIK +
Sbjct: 199 EDSDIKKI 206
>NP_001269323
          Length = 2297

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1    EDADIK 6
            EDADIK
Sbjct: 1926 EDADIK 1931
>NP_006639
          Length = 2217

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1    EDADIK 6
            EDADIK
Sbjct: 1889 EDADIK 1894
>XP_006720692
          Length = 1270

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   EDADIKSV 8
           ED+DIK +
Sbjct: 199 EDSDIKKI 206
>XP_006720691
          Length = 1182

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   EDADIKSV 8
           ED+DIK +
Sbjct: 199 EDSDIKKI 206
>XP_006720690
          Length = 1245

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   EDADIKSV 8
           ED+DIK +
Sbjct: 199 EDSDIKKI 206
>XP_005254635
          Length = 1280

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   EDADIKSV 8
           ED+DIK +
Sbjct: 199 EDSDIKKI 206
>XP_006717302
          Length = 2148

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1    EDADIK 6
            EDADIK
Sbjct: 1889 EDADIK 1894
>XP_005252201
          Length = 2185

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1    EDADIK 6
            EDADIK
Sbjct: 1889 EDADIK 1894
>XP_005252200
          Length = 2208

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1    EDADIK 6
            EDADIK
Sbjct: 1837 EDADIK 1842
>XP_006717301
          Length = 2212

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1    EDADIK 6
            EDADIK
Sbjct: 1889 EDADIK 1894
>XP_005252199
          Length = 2215

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1    EDADIK 6
            EDADIK
Sbjct: 1844 EDADIK 1849
>XP_005252198
          Length = 2217

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1    EDADIK 6
            EDADIK
Sbjct: 1889 EDADIK 1894
>XP_005252197
          Length = 2224

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1    EDADIK 6
            EDADIK
Sbjct: 1889 EDADIK 1894
>XP_006717300
          Length = 2227

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1    EDADIK 6
            EDADIK
Sbjct: 1889 EDADIK 1894
>XP_005252196
          Length = 2242

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1    EDADIK 6
            EDADIK
Sbjct: 1889 EDADIK 1894
>XP_005252195
          Length = 2259

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1    EDADIK 6
            EDADIK
Sbjct: 1888 EDADIK 1893
>XP_005252194
          Length = 2260

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1    EDADIK 6
            EDADIK
Sbjct: 1889 EDADIK 1894
>NP_001136277
          Length = 625

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/9 (44%), Positives = 8/9 (88%)

Query: 1   EDADIKSVT 9
           +DAD++ +T
Sbjct: 599 QDADVRGLT 607
>NP_001136278
          Length = 520

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/9 (44%), Positives = 8/9 (88%)

Query: 1   EDADIKSVT 9
           +DAD++ +T
Sbjct: 494 QDADVRGLT 502
>NP_005620
          Length = 635

 Score = 15.8 bits (29), Expect =  7355
 Identities = 4/9 (44%), Positives = 8/9 (88%)

Query: 1   EDADIKSVT 9
           +DAD++ +T
Sbjct: 609 QDADVRGLT 617
>NP_005490
          Length = 640

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   EDADIKSVT 9
           ED DIK ++
Sbjct: 231 EDGDIKRIS 239
>NP_001129491
          Length = 365

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   EDADIKSV 8
           +DAD+K V
Sbjct: 351 QDADLKDV 358
>NP_001186226
          Length = 719

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 2   DADIKS 7
           DADIKS
Sbjct: 638 DADIKS 643
>NP_004098
          Length = 365

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   EDADIKSV 8
           +DAD+K V
Sbjct: 351 QDADLKDV 358
>NP_057374
          Length = 719

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 2   DADIKS 7
           DADIKS
Sbjct: 638 DADIKS 643
>NP_056392
          Length = 980

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   EDADIKSVT 9
           +DAD+K+ T
Sbjct: 243 QDADLKTPT 251
>NP_001138997
          Length = 983

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   EDADIKSVT 9
           +DAD+K+ T
Sbjct: 246 QDADLKTPT 254
>NP_001138995
          Length = 972

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   EDADIKSVT 9
           +DAD+K+ T
Sbjct: 235 QDADLKTPT 243
>NP_001138994
          Length = 951

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   EDADIKSVT 9
           +DAD+K+ T
Sbjct: 243 QDADLKTPT 251
>NP_001138993
          Length = 980

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   EDADIKSVT 9
           +DAD+K+ T
Sbjct: 243 QDADLKTPT 251
>NP_001138992
          Length = 980

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   EDADIKSVT 9
           +DAD+K+ T
Sbjct: 243 QDADLKTPT 251
>NP_001186227
          Length = 719

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 2   DADIKS 7
           DADIKS
Sbjct: 638 DADIKS 643
>XP_006723149
          Length = 189

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   EDADIKSV 8
           +DAD+K V
Sbjct: 175 QDADLKDV 182
>XP_005258714
          Length = 225

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   EDADIKSV 8
           +DAD+K V
Sbjct: 211 QDADLKDV 218
>XP_005258461
          Length = 544

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   EDADIKSVT 9
           ED DIK ++
Sbjct: 135 EDGDIKRIS 143
>XP_005258460
          Length = 588

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   EDADIKSVT 9
           ED DIK ++
Sbjct: 231 EDGDIKRIS 239
>XP_006723025
          Length = 612

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   EDADIKSVT 9
           ED DIK ++
Sbjct: 203 EDGDIKRIS 211
>XP_006720765
          Length = 207

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   EDADIKSVT 9
           E  D+KSVT
Sbjct: 178 EAVDLKSVT 186
>XP_005265993
          Length = 349

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 2   DADIKS 7
           DADIKS
Sbjct: 268 DADIKS 273
>XP_006714937
          Length = 416

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 2   DADIKS 7
           DADIKS
Sbjct: 335 DADIKS 340
>XP_005265992
          Length = 416

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 2   DADIKS 7
           DADIKS
Sbjct: 335 DADIKS 340
>XP_005265991
          Length = 416

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 2   DADIKS 7
           DADIKS
Sbjct: 335 DADIKS 340
>XP_005265990
          Length = 438

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 2   DADIKS 7
           DADIKS
Sbjct: 357 DADIKS 362
>XP_005265989
          Length = 438

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 2   DADIKS 7
           DADIKS
Sbjct: 357 DADIKS 362
>XP_006714936
          Length = 553

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 2   DADIKS 7
           DADIKS
Sbjct: 472 DADIKS 477
>XP_006714935
          Length = 553

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 2   DADIKS 7
           DADIKS
Sbjct: 472 DADIKS 477
>XP_005265988
          Length = 620

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 2   DADIKS 7
           DADIKS
Sbjct: 539 DADIKS 544
>XP_006714934
          Length = 719

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 2   DADIKS 7
           DADIKS
Sbjct: 638 DADIKS 643
>XP_005265987
          Length = 719

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 2   DADIKS 7
           DADIKS
Sbjct: 638 DADIKS 643
>XP_006714532
          Length = 980

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   EDADIKSVT 9
           +DAD+K+ T
Sbjct: 243 QDADLKTPT 251
>NP_490647
          Length = 326

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   EDADIKSVT 9
           ED  +KS+T
Sbjct: 220 EDGQLKSLT 228
>NP_005485
          Length = 241

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   EDADIKSVT 9
           ED  +KS+T
Sbjct: 220 EDGQLKSLT 228
>NP_001069
          Length = 739

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   EDADIKSV 8
           ED D+KS+
Sbjct: 454 EDTDMKSL 461
>NP_001186763
          Length = 677

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   EDADIKSV 8
           ED D+KS+
Sbjct: 392 EDTDMKSL 399
>NP_542413
          Length = 647

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   EDADIKSV 8
           ED D+KS+
Sbjct: 362 EDTDMKSL 369
>NP_631896
          Length = 717

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1  EDADIKS 7
          ED D+KS
Sbjct: 82 EDVDLKS 88
>NP_005409
          Length = 1137

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   EDADIKS 7
           ED D+KS
Sbjct: 502 EDVDLKS 508
>NP_998783
          Length = 1137

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   EDADIKS 7
           ED D+KS
Sbjct: 502 EDVDLKS 508
>XP_005253141
          Length = 717

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1  EDADIKS 7
          ED D+KS
Sbjct: 82 EDVDLKS 88
>XP_005253140
          Length = 717

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1  EDADIKS 7
          ED D+KS
Sbjct: 82 EDVDLKS 88
>XP_005253138
          Length = 850

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   EDADIKS 7
           ED D+KS
Sbjct: 532 EDVDLKS 538
>XP_005253137
          Length = 1137

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   EDADIKS 7
           ED D+KS
Sbjct: 502 EDVDLKS 508
>XP_005253136
          Length = 1137

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   EDADIKS 7
           ED D+KS
Sbjct: 502 EDVDLKS 508
>XP_006718348
          Length = 1137

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   EDADIKS 7
           ED D+KS
Sbjct: 502 EDVDLKS 508
>XP_006718347
          Length = 1137

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   EDADIKS 7
           ED D+KS
Sbjct: 502 EDVDLKS 508
>XP_005253134
          Length = 1167

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   EDADIKS 7
           ED D+KS
Sbjct: 532 EDVDLKS 538
>XP_006715886
          Length = 257

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   EDADIKSVT 9
           ED  +KS+T
Sbjct: 220 EDGQLKSLT 228
>XP_005249573
          Length = 334

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   EDADIKSVT 9
           ED  +KS+T
Sbjct: 220 EDGQLKSLT 228
>XP_005249572
          Length = 334

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 1   EDADIKSVT 9
           ED  +KS+T
Sbjct: 220 EDGQLKSLT 228
  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.297    0.118    0.281 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 459,727
Number of extensions: 567
Number of successful extensions: 76
Number of sequences better than 10000.0: 76
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 76
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.1 bits)
S2: 28 (15.4 bits)

CANCERTOPE    |     Raghava's Group    |     IMTECH    |     CSIR    |     CRDD    |     GPSR Package