Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001268421 18 1135 NP_000170 18 1135 NP_112484 17 4312 NP_001230455 17 4312 NP_001177809 17 4312 XP_005274446 17 4312 XP_005271297 17 4312 XP_006711000 17 4312 XP_005271296 17 4312 NP_149976 16 7355 NP_006166 15 9605 NP_001248392 15 9605 NP_932326 15 9605 XP_005269924 15 9605 XP_005269922 15 9605 XP_006717933 15 9605 XP_005269921 15 9605>NP_001268421 Length = 1230 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 EASARASRE 9 +ASARASRE Sbjct: 22 KASARASRE 30>NP_000170 Length = 1360 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 EASARASRE 9 +ASARASRE Sbjct: 22 KASARASRE 30>NP_112484 Length = 247 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 EASARASRE 9 EA ARA+RE Sbjct: 46 EALARAARE 54>NP_001230455 Length = 272 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 EASARASRE 9 EA ARA+RE Sbjct: 46 EALARAARE 54>NP_001177809 Length = 277 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 EASARASRE 9 EA ARA+RE Sbjct: 46 EALARAARE 54>XP_005274446 Length = 415 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 EASARASR 8 E SARASR Sbjct: 372 ETSARASR 379>XP_005271297 Length = 268 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 EASARASRE 9 EA ARA+RE Sbjct: 46 EALARAARE 54>XP_006711000 Length = 289 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 EASARASRE 9 EA ARA+RE Sbjct: 46 EALARAARE 54>XP_005271296 Length = 302 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 EASARASRE 9 EA ARA+RE Sbjct: 46 EALARAARE 54>NP_149976 Length = 112 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 EASARASRE 9 +A ARA+RE Sbjct: 89 QARARAARE 97>NP_006166 Length = 1695 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SARASRE 9 +ARASRE Sbjct: 1503 TARASRE 1509>NP_001248392 Length = 1731 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SARASRE 9 +ARASRE Sbjct: 1538 TARASRE 1544>NP_932326 Length = 1730 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SARASRE 9 +ARASRE Sbjct: 1538 TARASRE 1544>XP_005269924 Length = 1627 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SARASRE 9 +ARASRE Sbjct: 1434 TARASRE 1440>XP_005269922 Length = 1695 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SARASRE 9 +ARASRE Sbjct: 1502 TARASRE 1508>XP_006717933 Length = 1696 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SARASRE 9 +ARASRE Sbjct: 1503 TARASRE 1509>XP_005269921 Length = 1696 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SARASRE 9 +ARASRE Sbjct: 1503 TARASRE 1509Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.288 0.0954 0.204 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 174,402 Number of extensions: 245 Number of successful extensions: 17 Number of sequences better than 10000.0: 17 Number of HSP's gapped: 17 Number of HSP's successfully gapped: 17 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.0 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |