Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_071934 17 2528 NP_001026884 17 2528 XP_005268062 17 2528 XP_005268061 17 2528 NP_598328 17 3301 NP_008881 17 3301 XP_006713376 17 3301 XP_006713375 17 3301 NP_001153605 17 4312 NP_062816 17 4312 NP_001153606 17 4312 NP_001153602 17 4312 NP_001153604 17 4312 NP_061836 16 5631 NP_219485 16 5631 NP_001011699 16 5631 NP_387505 16 5631 XP_005260211 16 5631 NP_001120929 16 7355 NP_003310 16 7355 NP_066940 16 7355 NP_597676 16 7355 NP_001243779 16 7355 NP_596869 16 7355 NP_001129246 16 7355 NP_001264301 16 7355 XP_005246888 16 7355 XP_006712788 16 7355 XP_006712787 16 7355 XP_006712786 16 7355 XP_006712235 16 7355 XP_006712234 16 7355 NP_003481 16 7355 NP_001254479 16 7355 NP_597681 16 7355 NP_058649 15 9605 NP_510880 15 9605 NP_976063 15 9605>NP_071934 Length = 1249 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 DTSLRKSFA 9 DTSL KSF+ Sbjct: 1186 DTSLDKSFS 1194>NP_001026884 Length = 1240 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 DTSLRKSFA 9 DTSL KSF+ Sbjct: 1186 DTSLDKSFS 1194>XP_005268062 Length = 1272 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 DTSLRKSFA 9 DTSL KSF+ Sbjct: 1218 DTSLDKSFS 1226>XP_005268061 Length = 1281 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 DTSLRKSFA 9 DTSL KSF+ Sbjct: 1218 DTSLDKSFS 1226>NP_598328 Length = 582 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 SLRKSFA 9 SLRKSFA Sbjct: 571 SLRKSFA 577>NP_008881 Length = 705 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 SLRKSFA 9 SLRKSFA Sbjct: 694 SLRKSFA 700>XP_006713376 Length = 325 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 SLRKSFA 9 SLRKSFA Sbjct: 314 SLRKSFA 320>XP_006713375 Length = 421 Score = 16.9 bits (32), Expect = 3301 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 SLRKSFA 9 SLRKSFA Sbjct: 410 SLRKSFA 416>NP_001153605 Length = 951 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DTSLRKSF 8 D S+RKSF Sbjct: 820 DRSMRKSF 827>NP_062816 Length = 932 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DTSLRKSF 8 D S+RKSF Sbjct: 801 DRSMRKSF 808>NP_001153606 Length = 822 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DTSLRKSF 8 D S+RKSF Sbjct: 691 DRSMRKSF 698>NP_001153602 Length = 923 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DTSLRKSF 8 D S+RKSF Sbjct: 792 DRSMRKSF 799>NP_001153604 Length = 942 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DTSLRKSF 8 D S+RKSF Sbjct: 811 DRSMRKSF 818>NP_061836 Length = 2320 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 DTSLRKS 7 DT+LRKS Sbjct: 949 DTTLRKS 955>NP_219485 Length = 410 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DTSLRKSFA 9 D LR+SFA Sbjct: 305 DLELRRSFA 313>NP_001011699 Length = 409 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DTSLRKSFA 9 D LR+SFA Sbjct: 304 DLELRRSFA 312>NP_387505 Length = 2269 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 DTSLRKS 7 DT+LRKS Sbjct: 949 DTTLRKS 955>XP_005260211 Length = 265 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DTSLRKSFA 9 D LR+SFA Sbjct: 160 DLELRRSFA 168>NP_001120929 Length = 532 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 DTSLRK 6 DTSLRK Sbjct: 21 DTSLRK 26>NP_003310 Length = 26926 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DTSLRKSFA 9 DTSL+ SF+ Sbjct: 26744 DTSLQGSFS 26752>NP_066940 Length = 614 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 DTSLRK 6 DTSLRK Sbjct: 103 DTSLRK 108>NP_597676 Length = 27051 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DTSLRKSFA 9 DTSL+ SF+ Sbjct: 26869 DTSLQGSFS 26877>NP_001243779 Length = 34350 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DTSLRKSFA 9 DTSL+ SF+ Sbjct: 34168 DTSLQGSFS 34176>NP_596869 Length = 33423 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DTSLRKSFA 9 DTSL+ SF+ Sbjct: 33241 DTSLQGSFS 33249>NP_001129246 Length = 579 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SLRKSFA 9 +LRKSFA Sbjct: 568 NLRKSFA 574>NP_001264301 Length = 1180 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 DTSLRKSFA 9 DTS R SFA Sbjct: 912 DTSNRGSFA 920>XP_005246888 Length = 22663 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DTSLRKSFA 9 DTSL+ SF+ Sbjct: 22481 DTSLQGSFS 22489>XP_006712788 Length = 24022 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DTSLRKSFA 9 DTSL+ SF+ Sbjct: 23840 DTSLQGSFS 23848>XP_006712787 Length = 33978 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DTSLRKSFA 9 DTSL+ SF+ Sbjct: 33796 DTSLQGSFS 33804>XP_006712786 Length = 35484 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DTSLRKSFA 9 DTSL+ SF+ Sbjct: 35302 DTSLQGSFS 35310>XP_006712235 Length = 1180 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 DTSLRKSFA 9 DTS R SFA Sbjct: 876 DTSNRGSFA 884>XP_006712234 Length = 1215 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 DTSLRKSFA 9 DTS R SFA Sbjct: 911 DTSNRGSFA 919>NP_003481 Length = 580 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SLRKSFA 9 +LRKSFA Sbjct: 569 NLRKSFA 575>NP_001254479 Length = 35991 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DTSLRKSFA 9 DTSL+ SF+ Sbjct: 35809 DTSLQGSFS 35817>NP_597681 Length = 27118 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DTSLRKSFA 9 DTSL+ SF+ Sbjct: 26936 DTSLQGSFS 26944>NP_058649 Length = 933 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LRKSFA 9 LRKSFA Sbjct: 121 LRKSFA 126>NP_510880 Length = 2054 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TSLRKSF 8 TS+RK+F Sbjct: 1003 TSMRKTF 1009>NP_976063 Length = 2039 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TSLRKSF 8 TS+RK+F Sbjct: 1003 TSMRKTF 1009Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.316 0.122 0.309 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 445,601 Number of extensions: 783 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |