Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 19 665 XP_006716142 19 665 XP_005250088 19 665 XP_006716141 19 665 XP_005250085 19 665 XP_006716140 19 665 XP_005250084 19 665 XP_005250083 19 665 XP_005250082 19 665 NP_001073996 17 4312 XP_006712602 17 4312 NP_065789 16 5631 NP_001136171 16 7355 NP_001027466 15 9605 NP_000053 15 9605 NP_001073932 15 9605 NP_001368 15 9605 NP_840060 15 9605 NP_001167543 15 9605 NP_001167542 15 9605 NP_955452 15 9605 XP_006718966 15 9605 XP_005248535 15 9605 XP_006713543 15 9605>NP_733751 Length = 4911 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DTMLNAQRS 9 DTM NAQRS Sbjct: 1627 DTMSNAQRS 1635>XP_006716142 Length = 4927 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DTMLNAQRS 9 DTM NAQRS Sbjct: 1644 DTMSNAQRS 1652>XP_005250088 Length = 4928 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DTMLNAQRS 9 DTM NAQRS Sbjct: 1644 DTMSNAQRS 1652>XP_006716141 Length = 4959 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DTMLNAQRS 9 DTM NAQRS Sbjct: 1644 DTMSNAQRS 1652>XP_005250085 Length = 4979 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DTMLNAQRS 9 DTM NAQRS Sbjct: 1644 DTMSNAQRS 1652>XP_006716140 Length = 4982 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DTMLNAQRS 9 DTM NAQRS Sbjct: 1644 DTMSNAQRS 1652>XP_005250084 Length = 4982 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DTMLNAQRS 9 DTM NAQRS Sbjct: 1644 DTMSNAQRS 1652>XP_005250083 Length = 4982 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DTMLNAQRS 9 DTM NAQRS Sbjct: 1643 DTMSNAQRS 1651>XP_005250082 Length = 4983 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DTMLNAQRS 9 DTM NAQRS Sbjct: 1644 DTMSNAQRS 1652>NP_001073996 Length = 2116 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DTMLNAQRS 9 DT+L QRS Sbjct: 752 DTLLEVQRS 760>XP_006712602 Length = 2142 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DTMLNAQRS 9 DT+L QRS Sbjct: 752 DTLLEVQRS 760>NP_065789 Length = 1771 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 DTMLNAQR 8 D++LN+QR Sbjct: 716 DSLLNSQR 723>NP_001136171 Length = 975 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TMLNAQRS 9 T+LN+Q+S Sbjct: 22 TLLNSQKS 29>NP_001027466 Length = 500 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 DTMLNAQRS 9 DT +NA R+ Sbjct: 234 DTFVNASRT 242>NP_000053 Length = 500 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 DTMLNAQRS 9 DT +NA R+ Sbjct: 234 DTFVNASRT 242>NP_001073932 Length = 4314 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 DTMLNAQR 8 DT LNA R Sbjct: 4184 DTFLNALR 4191>NP_001368 Length = 4307 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 DTMLNAQR 8 DT LNA R Sbjct: 4177 DTFLNALR 4184>NP_840060 Length = 423 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 DTMLNAQR 8 DT LNA R Sbjct: 148 DTFLNAWR 155>NP_001167543 Length = 461 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 DTMLNAQR 8 DT LNA R Sbjct: 148 DTFLNAWR 155>NP_001167542 Length = 420 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 DTMLNAQR 8 DT LNA R Sbjct: 148 DTFLNAWR 155>NP_955452 Length = 2590 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TMLNAQRS 9 ++LNAQR+ Sbjct: 800 SLLNAQRA 807>XP_006718966 Length = 4300 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 DTMLNAQR 8 DT LNA R Sbjct: 4170 DTFLNALR 4177>XP_005248535 Length = 390 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 DTMLNAQR 8 DT LNA R Sbjct: 77 DTFLNAWR 84>XP_006713543 Length = 2591 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 TMLNAQRS 9 ++LNAQR+ Sbjct: 801 SLLNAQRA 808Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.310 0.114 0.284 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 307,317 Number of extensions: 331 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |