Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004251 20 509 NP_004064 17 4312 NP_056142 16 7355 NP_003706 16 7355 NP_001276978 16 7355 NP_064450 16 7355 XP_006714460 16 7355 XP_006714459 16 7355 XP_005273257 16 7355 XP_006711311 16 7355 XP_005245106 16 7355 NP_054734 16 7355 NP_001127835 15 9605 NP_001182505 15 9605 NP_001182507 15 9605 NP_001182506 15 9605 NP_001153777 15 9605 NP_079136 15 9605 NP_000333 15 9605 XP_005257650 15 9605 XP_005257649 15 9605 XP_006721334 15 9605 NP_849150 15 9605>NP_004251 Length = 1208 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DTDQALLSL 9 DTDQALL+L Sbjct: 683 DTDQALLTL 691>NP_004064 Length = 646 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TDQALLSL 9 TDQALL L Sbjct: 569 TDQALLML 576>NP_056142 Length = 1016 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DTDQALLS 8 DTD+ LLS Sbjct: 750 DTDRPLLS 757>NP_003706 Length = 962 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DTDQALLSL 9 D DQ +LSL Sbjct: 915 DQDQKILSL 923>NP_001276978 Length = 973 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DTDQALLSL 9 D DQ +LSL Sbjct: 926 DQDQKILSL 934>NP_064450 Length = 1722 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DTDQALLSL 9 DT+QAL +L Sbjct: 268 DTEQALSAL 276>XP_006714460 Length = 966 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DTDQALLSL 9 D DQ +LSL Sbjct: 919 DQDQKILSL 927>XP_006714459 Length = 969 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DTDQALLSL 9 D DQ +LSL Sbjct: 922 DQDQKILSL 930>XP_005273257 Length = 1726 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DTDQALLSL 9 DT+QAL +L Sbjct: 268 DTEQALSAL 276>XP_006711311 Length = 950 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DTDQALLS 8 DTD+ LLS Sbjct: 684 DTDRPLLS 691>XP_005245106 Length = 970 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DTDQALLS 8 DTD+ LLS Sbjct: 704 DTDRPLLS 711>NP_054734 Length = 95 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DTDQALLSL 9 D DQAL+ L Sbjct: 62 DMDQALVDL 70>NP_001127835 Length = 1227 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 DQALLSL 9 DQALLS+ Sbjct: 385 DQALLSV 391>NP_001182505 Length = 111 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 DTDQALLSL 9 D DQA+L + Sbjct: 85 DIDQAMLDM 93>NP_001182507 Length = 111 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 DTDQALLSL 9 D DQA+L + Sbjct: 85 DIDQAMLDM 93>NP_001182506 Length = 111 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 DTDQALLSL 9 D DQA+L + Sbjct: 85 DIDQAMLDM 93>NP_001153777 Length = 473 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TDQALLS 8 TDQ LLS Sbjct: 433 TDQGLLS 439>NP_079136 Length = 449 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TDQALLS 8 TDQ LLS Sbjct: 409 TDQGLLS 415>NP_000333 Length = 911 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 TDQALLSL 9 ++QALLSL Sbjct: 328 SEQALLSL 335>XP_005257650 Length = 846 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 TDQALLSL 9 ++QALLSL Sbjct: 263 SEQALLSL 270>XP_005257649 Length = 911 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 TDQALLSL 9 ++QALLSL Sbjct: 328 SEQALLSL 335>XP_006721334 Length = 476 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TDQALLS 8 TDQ LLS Sbjct: 436 TDQGLLS 442>NP_849150 Length = 1445 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 DTDQALL 7 DT QALL Sbjct: 670 DTQQALL 676Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.311 0.128 0.314 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 456,106 Number of extensions: 690 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |