Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 20 390 NP_671714 20 390 XP_006715890 20 390 XP_005250160 20 390 XP_005250159 20 390 NP_996999 17 2528 XP_005261256 17 3301 XP_005261255 17 3301 XP_005261253 17 3301 XP_005261252 17 3301 NP_003672 17 3301 NP_619542 16 5631 NP_116281 16 5631 NP_001273420 16 5631 XP_005274600 16 5631 XP_005254786 16 5631 NP_002961 16 7355 NP_996994 16 7355 XP_005249842 16 7355 NP_005106 15 9605 NP_059447 15 9605 NP_653219 15 9605 NP_066301 15 9605 NP_705833 15 9605 XP_005251089 15 9605 XP_005251088 15 9605 XP_005247174 15 9605 XP_006711216 15 9605 XP_005244942 15 9605 XP_005244941 15 9605 XP_005244940 15 9605 XP_006711215 15 9605 XP_005244939 15 9605 XP_006711214 15 9605 XP_005244938 15 9605 XP_005244937 15 9605 NP_001135780 15 9605>NP_005742 Length = 3907 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DSVVLTESD 9 DSVV+TESD Sbjct: 1387 DSVVITESD 1395>NP_671714 Length = 3899 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DSVVLTESD 9 DSVV+TESD Sbjct: 1387 DSVVITESD 1395>XP_006715890 Length = 3860 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DSVVLTESD 9 DSVV+TESD Sbjct: 1387 DSVVITESD 1395>XP_005250160 Length = 3939 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DSVVLTESD 9 DSVV+TESD Sbjct: 1387 DSVVITESD 1395>XP_005250159 Length = 3952 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DSVVLTESD 9 DSVV+TESD Sbjct: 1387 DSVVITESD 1395>NP_996999 Length = 866 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DSVVLTESD 9 D V+LTE D Sbjct: 61 DDVILTEDD 69>XP_005261256 Length = 239 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DSVVLTESD 9 D+VV+T SD Sbjct: 108 DTVVITSSD 116>XP_005261255 Length = 272 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DSVVLTESD 9 D+VV+T SD Sbjct: 141 DTVVITSSD 149>XP_005261253 Length = 321 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DSVVLTESD 9 D+VV+T SD Sbjct: 190 DTVVITSSD 198>XP_005261252 Length = 364 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DSVVLTESD 9 D+VV+T SD Sbjct: 233 DTVVITSSD 241>NP_003672 Length = 312 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DSVVLTESD 9 D+VV+T SD Sbjct: 181 DTVVITSSD 189>NP_619542 Length = 1041 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SVVLTESD 9 +VVLTE+D Sbjct: 1020 NVVLTEND 1027>NP_116281 Length = 570 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VVLTESD 9 ++LTESD Sbjct: 520 IILTESD 526>NP_001273420 Length = 336 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VVLTESD 9 ++LTESD Sbjct: 286 IILTESD 292>XP_005274600 Length = 1059 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SVVLTESD 9 +VVLTE+D Sbjct: 1038 NVVLTEND 1045>XP_005254786 Length = 565 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VVLTESD 9 ++LTESD Sbjct: 515 IILTESD 521>NP_002961 Length = 171 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 DSVVLTESD 9 + V+LTE D Sbjct: 32 EQVILTEKD 40>NP_996994 Length = 923 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DSVVLTESD 9 D V+LTE++ Sbjct: 61 DDVILTETN 69>XP_005249842 Length = 923 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DSVVLTESD 9 D V+LTE++ Sbjct: 61 DDVILTETN 69>NP_005106 Length = 893 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DSVVLTE 7 D+V+LTE Sbjct: 217 DAVILTE 223>NP_059447 Length = 893 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DSVVLTE 7 D+V+LTE Sbjct: 217 DAVILTE 223>NP_653219 Length = 448 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DSVVLTESD 9 D+VV+TE + Sbjct: 412 DAVVVTEGE 420>NP_066301 Length = 538 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VVLTESD 9 VVLTE D Sbjct: 346 VVLTEKD 352>NP_705833 Length = 2970 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DSVVLTESD 9 DS+ L ESD Sbjct: 1415 DSINLQESD 1423>XP_005251089 Length = 480 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VVLTESD 9 VVLTE D Sbjct: 444 VVLTEKD 450>XP_005251088 Length = 636 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 VVLTESD 9 VVLTE D Sbjct: 444 VVLTEKD 450>XP_005247174 Length = 2679 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DSVVLTESD 9 DS+ L ESD Sbjct: 1124 DSINLQESD 1132>XP_006711216 Length = 392 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DSVVLTESD 9 D+VV+TE + Sbjct: 356 DAVVVTEGE 364>XP_005244942 Length = 392 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DSVVLTESD 9 D+VV+TE + Sbjct: 356 DAVVVTEGE 364>XP_005244941 Length = 410 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DSVVLTESD 9 D+VV+TE + Sbjct: 374 DAVVVTEGE 382>XP_005244940 Length = 426 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DSVVLTESD 9 D+VV+TE + Sbjct: 390 DAVVVTEGE 398>XP_006711215 Length = 448 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DSVVLTESD 9 D+VV+TE + Sbjct: 412 DAVVVTEGE 420>XP_005244939 Length = 448 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DSVVLTESD 9 D+VV+TE + Sbjct: 412 DAVVVTEGE 420>XP_006711214 Length = 464 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DSVVLTESD 9 D+VV+TE + Sbjct: 428 DAVVVTEGE 436>XP_005244938 Length = 464 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DSVVLTESD 9 D+VV+TE + Sbjct: 428 DAVVVTEGE 436>XP_005244937 Length = 464 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DSVVLTESD 9 D+VV+TE + Sbjct: 428 DAVVVTEGE 436>NP_001135780 Length = 2156 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 DSVVLTES 8 D +VLTE+ Sbjct: 1455 DDIVLTEN 1462Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.295 0.117 0.274 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 449,219 Number of extensions: 795 Number of successful extensions: 37 Number of sequences better than 10000.0: 37 Number of HSP's gapped: 37 Number of HSP's successfully gapped: 37 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |