Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004324 20 299 XP_005250103 20 299 XP_005250102 20 299 NP_065788 17 2528 NP_003694 16 5631 XP_006713992 16 5631 NP_001413 16 7355 NP_001230009 16 7355 NP_938195 16 7355 NP_665803 16 7355 NP_001230010 16 7355 NP_078785 16 7355 NP_057095 15 9605 NP_778203 15 9605 NP_001834 15 9605 NP_001019903 15 9605 XP_006719304 15 9605 XP_005268708 15 9605 XP_005245943 15 9605 XP_006710737 15 9605 XP_005245946 15 9605 XP_005245945 15 9605 XP_005245944 15 9605 XP_005245942 15 9605 NP_008929 15 9605 NP_690850 15 9605>NP_004324 Length = 766 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DSNRMKTLG 9 D NRMKTLG Sbjct: 434 DRNRMKTLG 442>XP_005250103 Length = 758 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DSNRMKTLG 9 D NRMKTLG Sbjct: 434 DRNRMKTLG 442>XP_005250102 Length = 767 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DSNRMKTLG 9 D NRMKTLG Sbjct: 434 DRNRMKTLG 442>NP_065788 Length = 789 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DSNRMKTLG 9 DSNR+ +LG Sbjct: 108 DSNRLPSLG 116>NP_003694 Length = 857 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 SNRMKT 7 SNRMKT Sbjct: 269 SNRMKT 274>XP_006713992 Length = 857 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 SNRMKT 7 SNRMKT Sbjct: 269 SNRMKT 274>NP_001413 Length = 255 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DSNRMKTLG 9 DSN +KT G Sbjct: 138 DSNCLKTSG 146>NP_001230009 Length = 160 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DSNRMKTLG 9 DSN +KT G Sbjct: 43 DSNCLKTSG 51>NP_938195 Length = 265 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DSNRMKTLG 9 DSN +KT G Sbjct: 148 DSNCLKTSG 156>NP_665803 Length = 1025 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SNRMKTL 8 SNR KTL Sbjct: 867 SNRFKTL 873>NP_001230010 Length = 187 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DSNRMKTLG 9 DSN +KT G Sbjct: 70 DSNCLKTSG 78>NP_078785 Length = 628 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 DSNRMKTLG 9 D NR+ +LG Sbjct: 115 DGNRLTSLG 123>NP_057095 Length = 373 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SNRMKTLG 9 S+R+K+LG Sbjct: 225 SDRLKSLG 232>NP_778203 Length = 1007 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SNRMKTLG 9 SNR+KT G Sbjct: 685 SNRIKTDG 692>NP_001834 Length = 1018 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SNRMKTLG 9 SNR+KT G Sbjct: 696 SNRIKTDG 703>NP_001019903 Length = 297 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SNRMKTLG 9 S+R+K+LG Sbjct: 149 SDRLKSLG 156>XP_006719304 Length = 1018 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SNRMKTLG 9 SNR+KT G Sbjct: 696 SNRIKTDG 703>XP_005268708 Length = 1018 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SNRMKTLG 9 SNR+KT G Sbjct: 696 SNRIKTDG 703>XP_005245943 Length = 297 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SNRMKTLG 9 S+R+K+LG Sbjct: 149 SDRLKSLG 156>XP_006710737 Length = 297 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SNRMKTLG 9 S+R+K+LG Sbjct: 149 SDRLKSLG 156>XP_005245946 Length = 297 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SNRMKTLG 9 S+R+K+LG Sbjct: 149 SDRLKSLG 156>XP_005245945 Length = 297 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SNRMKTLG 9 S+R+K+LG Sbjct: 149 SDRLKSLG 156>XP_005245944 Length = 297 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SNRMKTLG 9 S+R+K+LG Sbjct: 149 SDRLKSLG 156>XP_005245942 Length = 401 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SNRMKTLG 9 S+R+K+LG Sbjct: 253 SDRLKSLG 260>NP_008929 Length = 276 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DSNRMKTLG 9 DS+R TLG Sbjct: 2 DSSREPTLG 10>NP_690850 Length = 1714 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DSNRMKTLG 9 DSN + TLG Sbjct: 198 DSNSVFTLG 206Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.309 0.125 0.334 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 417,234 Number of extensions: 838 Number of successful extensions: 26 Number of sequences better than 10000.0: 26 Number of HSP's gapped: 26 Number of HSP's successfully gapped: 26 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |