Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000236 20 509 NP_001120972 20 509 XP_006716054 20 509 XP_006716053 20 509 XP_006716052 20 509 XP_006716051 20 509 NP_056428 17 2528 NP_001129735 17 4312 XP_006722712 17 4312 NP_149975 16 7355>NP_000236 Length = 1390 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DRLVSARSI 9 DRLVSARS+ Sbjct: 981 DRLVSARSV 989>NP_001120972 Length = 1408 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DRLVSARSI 9 DRLVSARS+ Sbjct: 999 DRLVSARSV 1007>XP_006716054 Length = 960 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DRLVSARSI 9 DRLVSARS+ Sbjct: 551 DRLVSARSV 559>XP_006716053 Length = 960 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DRLVSARSI 9 DRLVSARS+ Sbjct: 551 DRLVSARSV 559>XP_006716052 Length = 1409 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DRLVSARSI 9 DRLVSARS+ Sbjct: 1000 DRLVSARSV 1008>XP_006716051 Length = 1427 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DRLVSARSI 9 DRLVSARS+ Sbjct: 1018 DRLVSARSV 1026>NP_056428 Length = 623 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 DRLVSARS 8 DRL+SARS Sbjct: 596 DRLLSARS 603>NP_001129735 Length = 421 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 DRLVSARSI 9 DRL ARSI Sbjct: 334 DRLCDARSI 342>XP_006722712 Length = 446 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 DRLVSARSI 9 DRL ARSI Sbjct: 334 DRLCDARSI 342>NP_149975 Length = 555 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DRLVSARSI 9 DRL+ ARS+ Sbjct: 424 DRLLWARSV 432Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.325 0.133 0.319 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 229,900 Number of extensions: 161 Number of successful extensions: 10 Number of sequences better than 10000.0: 10 Number of HSP's gapped: 10 Number of HSP's successfully gapped: 10 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |