Cancertope

In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer

Blast-Search of mutated query peptide against human proteome

BLAST Search Results
BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_115803                                                              20     509
NP_065988                                                              18    1935
NP_001272390                                                           18    1935
NP_006624                                                              18    1935
NP_001272391                                                           18    1935
NP_001272389                                                           18    1935
NP_003861                                                              18    1935
XP_005267986                                                           18    1935
XP_005248471                                                           18    1935
XP_005248470                                                           18    1935
XP_006714585                                                           18    1935
XP_005248468                                                           18    1935
XP_005248467                                                           18    1935
XP_005248466                                                           18    1935
NP_036467                                                              17    2528
XP_005272534                                                           17    2528
XP_005272533                                                           17    2528
XP_005272532                                                           17    2528
NP_001158184                                                           17    3301
NP_000472                                                              17    3301
NP_001158182                                                           17    3301
NP_001158183                                                           17    3301
XP_005261936                                                           17    3301
XP_005261935                                                           17    3301
XP_005261934                                                           17    3301
XP_005261933                                                           17    3301
NP_055691                                                              17    3301
NP_004412                                                              16    5631
NP_037379                                                              16    5631
NP_659540                                                              16    5631
NP_001128662                                                           16    5631
NP_056057                                                              16    5631
NP_001035207                                                           16    5631
NP_005481                                                              16    5631
NP_060127                                                              16    5631
XP_005259531                                                           16    5631
XP_005259529                                                           16    5631
XP_005259524                                                           16    5631
XP_005264437                                                           16    5631
XP_005264323                                                           16    5631
XP_005244790                                                           16    5631
XP_005244789                                                           16    5631
XP_005244788                                                           16    5631
NP_982261                                                              16    5631
NP_001002243                                                           16    5631
NP_001138227                                                           16    7355
NP_001073885                                                           16    7355
NP_001268231                                                           16    7355
NP_115756                                                              16    7355
NP_733792                                                              16    7355
NP_733781                                                              16    7355
XP_006716515                                                           16    7355
XP_006716514                                                           16    7355
XP_005251308                                                           16    7355
XP_006716513                                                           16    7355
XP_006714784                                                           16    7355
NP_001003703                                                           15    9605
NP_001003697                                                           15    9605
NP_001676                                                              15    9605
NP_001003696                                                           15    9605
NP_001003701                                                           15    9605
NP_002733                                                              15    9605
NP_001138671                                                           15    9605
NP_061060                                                              15    9605
XP_005261049                                                           15    9605
XP_005267916                                                           15    9605
XP_005271878                                                           15    9605
XP_005271877                                                           15    9605
XP_005271876                                                           15    9605
>NP_115803
          Length = 1156

 Score = 19.6 bits (39), Expect =   509
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   DQRRNVGIM 9
           DQRRNVG M
Sbjct: 803 DQRRNVGNM 811
>NP_065988
          Length = 2048

 Score = 17.7 bits (34), Expect =  1935
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1    DQRRNVGI 8
            +QR+NVGI
Sbjct: 1952 EQRKNVGI 1959
>NP_001272390
          Length = 1071

 Score = 17.7 bits (34), Expect =  1935
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1   DQRRNVG 7
           DQRRN+G
Sbjct: 629 DQRRNLG 635
>NP_006624
          Length = 1575

 Score = 17.7 bits (34), Expect =  1935
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1    DQRRNVG 7
            DQRRN+G
Sbjct: 1133 DQRRNLG 1139
>NP_001272391
          Length = 1071

 Score = 17.7 bits (34), Expect =  1935
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1   DQRRNVG 7
           DQRRN+G
Sbjct: 629 DQRRNLG 635
>NP_001272389
          Length = 1525

 Score = 17.7 bits (34), Expect =  1935
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1    DQRRNVG 7
            DQRRN+G
Sbjct: 1083 DQRRNLG 1089
>NP_003861
          Length = 1657

 Score = 17.7 bits (34), Expect =  1935
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1    DQRRNVG 7
            DQRRN+G
Sbjct: 1220 DQRRNLG 1226
>XP_005267986
          Length = 2022

 Score = 17.7 bits (34), Expect =  1935
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1    DQRRNVGI 8
            +QR+NVGI
Sbjct: 1926 EQRKNVGI 1933
>XP_005248471
          Length = 1128

 Score = 17.7 bits (34), Expect =  1935
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1   DQRRNVG 7
           DQRRN+G
Sbjct: 686 DQRRNLG 692
>XP_005248470
          Length = 1518

 Score = 17.7 bits (34), Expect =  1935
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1    DQRRNVG 7
            DQRRN+G
Sbjct: 1076 DQRRNLG 1082
>XP_006714585
          Length = 1525

 Score = 17.7 bits (34), Expect =  1935
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1    DQRRNVG 7
            DQRRN+G
Sbjct: 1083 DQRRNLG 1089
>XP_005248468
          Length = 1548

 Score = 17.7 bits (34), Expect =  1935
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1    DQRRNVG 7
            DQRRN+G
Sbjct: 1106 DQRRNLG 1112
>XP_005248467
          Length = 1548

 Score = 17.7 bits (34), Expect =  1935
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1    DQRRNVG 7
            DQRRN+G
Sbjct: 1106 DQRRNLG 1112
>XP_005248466
          Length = 1565

 Score = 17.7 bits (34), Expect =  1935
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1    DQRRNVG 7
            DQRRN+G
Sbjct: 1123 DQRRNLG 1129
>NP_036467
          Length = 1098

 Score = 17.3 bits (33), Expect =  2528
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 1   DQRRNVGIM 9
           +QR+N+G+M
Sbjct: 220 EQRQNLGLM 228
>XP_005272534
          Length = 1071

 Score = 17.3 bits (33), Expect =  2528
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 1   DQRRNVGIM 9
           +QR+N+G+M
Sbjct: 220 EQRQNLGLM 228
>XP_005272533
          Length = 1096

 Score = 17.3 bits (33), Expect =  2528
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 1   DQRRNVGIM 9
           +QR+N+G+M
Sbjct: 220 EQRQNLGLM 228
>XP_005272532
          Length = 1100

 Score = 17.3 bits (33), Expect =  2528
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 1   DQRRNVGIM 9
           +QR+N+G+M
Sbjct: 220 EQRQNLGLM 228
>NP_001158184
          Length = 386

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   QRRNVGIM 9
           QRR VG+M
Sbjct: 317 QRRRVGLM 324
>NP_000472
          Length = 403

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   QRRNVGIM 9
           QRR VG+M
Sbjct: 317 QRRRVGLM 324
>NP_001158182
          Length = 359

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   QRRNVGIM 9
           QRR VG+M
Sbjct: 273 QRRRVGLM 280
>NP_001158183
          Length = 347

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2   QRRNVGIM 9
           QRR VG+M
Sbjct: 261 QRRRVGLM 268
>XP_005261936
          Length = 202

 Score = 16.9 bits (32), Expect =  3301
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 1   DQRRNVGIM 9
           D+RR+VG++
Sbjct: 102 DKRRDVGVI 110
>XP_005261935
          Length = 202

 Score = 16.9 bits (32), Expect =  3301
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 1   DQRRNVGIM 9
           D+RR+VG++
Sbjct: 102 DKRRDVGVI 110
>XP_005261934
          Length = 202

 Score = 16.9 bits (32), Expect =  3301
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 1   DQRRNVGIM 9
           D+RR+VG++
Sbjct: 102 DKRRDVGVI 110
>XP_005261933
          Length = 202

 Score = 16.9 bits (32), Expect =  3301
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 1   DQRRNVGIM 9
           D+RR+VG++
Sbjct: 102 DKRRDVGVI 110
>NP_055691
          Length = 202

 Score = 16.9 bits (32), Expect =  3301
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 1   DQRRNVGIM 9
           D+RR+VG++
Sbjct: 102 DKRRDVGVI 110
>NP_004412
          Length = 670

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 1   DQRRNVGI 8
           D+RR+VG+
Sbjct: 166 DRRRDVGL 173
>NP_037379
          Length = 458

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2   QRRNVGIM 9
           QRR +G+M
Sbjct: 358 QRRYIGVM 365
>NP_659540
          Length = 361

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2   QRRNVGIM 9
           QRR +G+M
Sbjct: 293 QRRYIGVM 300
>NP_001128662
          Length = 1133

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 3   RRNVGI 8
           RRNVGI
Sbjct: 903 RRNVGI 908
>NP_056057
          Length = 1205

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 3   RRNVGI 8
           RRNVGI
Sbjct: 964 RRNVGI 969
>NP_001035207
          Length = 1450

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 3    RRNVGI 8
            RRNVGI
Sbjct: 1209 RRNVGI 1214
>NP_005481
          Length = 576

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   DQRRNVGI 8
           DQR N+G+
Sbjct: 337 DQRGNMGV 344
>NP_060127
          Length = 909

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   DQRRNVGIM 9
           +QR+NVG +
Sbjct: 139 EQRQNVGTL 147
>XP_005259531
          Length = 399

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   DQRRNVGI 8
           DQR N+G+
Sbjct: 337 DQRGNMGV 344
>XP_005259529
          Length = 483

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   DQRRNVGI 8
           DQR N+G+
Sbjct: 215 DQRGNMGV 222
>XP_005259524
          Length = 605

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   DQRRNVGI 8
           DQR N+G+
Sbjct: 337 DQRGNMGV 344
>XP_005264437
          Length = 937

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   DQRRNVGIM 9
           +QR+NVG +
Sbjct: 139 EQRQNVGTL 147
>XP_005264323
          Length = 426

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2   QRRNVGIM 9
           QRR +G+M
Sbjct: 358 QRRYIGVM 365
>XP_005244790
          Length = 549

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 1   DQRRNVGI 8
           D+RR+VG+
Sbjct: 166 DRRRDVGL 173
>XP_005244789
          Length = 574

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 1   DQRRNVGI 8
           D+RR+VG+
Sbjct: 166 DRRRDVGL 173
>XP_005244788
          Length = 695

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 1   DQRRNVGI 8
           D+RR+VG+
Sbjct: 166 DRRRDVGL 173
>NP_982261
          Length = 936

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   DQRRNVGIM 9
           +QR+NVG +
Sbjct: 139 EQRQNVGTL 147
>NP_001002243
          Length = 908

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   DQRRNVGIM 9
           +QR+NVG +
Sbjct: 139 EQRQNVGTL 147
>NP_001138227
          Length = 692

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   DQRRNVG 7
           DQ+ NVG
Sbjct: 532 DQKENVG 538
>NP_001073885
          Length = 752

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   DQRRNVG 7
           DQ+ NVG
Sbjct: 532 DQKENVG 538
>NP_001268231
          Length = 811

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 4   RNVGIM 9
           RN+GIM
Sbjct: 103 RNIGIM 108
>NP_115756
          Length = 779

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 4  RNVGIM 9
          RN+GIM
Sbjct: 71 RNIGIM 76
>NP_733792
          Length = 732

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 4  RNVGIM 9
          RN+GIM
Sbjct: 71 RNIGIM 76
>NP_733781
          Length = 513

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 4  RNVGIM 9
          RN+GIM
Sbjct: 71 RNIGIM 76
>XP_006716515
          Length = 655

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   DQRRNVG 7
           DQ+ NVG
Sbjct: 532 DQKENVG 538
>XP_006716514
          Length = 672

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   DQRRNVG 7
           DQ+ NVG
Sbjct: 452 DQKENVG 458
>XP_005251308
          Length = 691

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   DQRRNVG 7
           DQ+ NVG
Sbjct: 531 DQKENVG 537
>XP_006716513
          Length = 751

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   DQRRNVG 7
           DQ+ NVG
Sbjct: 531 DQKENVG 537
>XP_006714784
          Length = 734

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 4  RNVGIM 9
          RN+GIM
Sbjct: 71 RNIGIM 76
>NP_001003703
          Length = 108

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/6 (66%), Positives = 6/6 (100%)

Query: 3  RRNVGI 8
          RRN+G+
Sbjct: 22 RRNIGV 27
>NP_001003697
          Length = 108

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/6 (66%), Positives = 6/6 (100%)

Query: 3  RRNVGI 8
          RRN+G+
Sbjct: 22 RRNIGV 27
>NP_001676
          Length = 108

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/6 (66%), Positives = 6/6 (100%)

Query: 3  RRNVGI 8
          RRN+G+
Sbjct: 22 RRNIGV 27
>NP_001003696
          Length = 108

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/6 (66%), Positives = 6/6 (100%)

Query: 3  RRNVGI 8
          RRN+G+
Sbjct: 22 RRNIGV 27
>NP_001003701
          Length = 116

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/6 (66%), Positives = 6/6 (100%)

Query: 3  RRNVGI 8
          RRN+G+
Sbjct: 30 RRNIGV 35
>NP_002733
          Length = 912

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 6/9 (66%)

Query: 1   DQRRNVGIM 9
           D  RN G+M
Sbjct: 349 DSERNSGLM 357
>NP_001138671
          Length = 63

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1  DQRRNVG 7
          D+RRN G
Sbjct: 33 DKRRNYG 39
>NP_061060
          Length = 542

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 2   QRRNVG 7
           +RRNVG
Sbjct: 98  ERRNVG 103
>XP_005261049
          Length = 108

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/6 (66%), Positives = 6/6 (100%)

Query: 3  RRNVGI 8
          RRN+G+
Sbjct: 22 RRNIGV 27
>XP_005267916
          Length = 920

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 6/9 (66%)

Query: 1   DQRRNVGIM 9
           D  RN G+M
Sbjct: 357 DSERNSGLM 365
>XP_005271878
          Length = 327

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 2   QRRNVG 7
           +RRNVG
Sbjct: 98  ERRNVG 103
>XP_005271877
          Length = 333

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 2   QRRNVG 7
           +RRNVG
Sbjct: 98  ERRNVG 103
>XP_005271876
          Length = 342

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 2   QRRNVG 7
           +RRNVG
Sbjct: 98  ERRNVG 103
  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.329    0.143    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 493,455
Number of extensions: 773
Number of successful extensions: 69
Number of sequences better than 10000.0: 69
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 69
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (16.1 bits)
S2: 28 (15.4 bits)

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