Cancertope

In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer

Blast-Search of mutated query peptide against human proteome

BLAST Search Results
BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_000224                                                              22     134
XP_005264366                                                           22     134
XP_006712078                                                           22     134
NP_000360                                                              21     229
XP_005268094                                                           21     229
NP_795352                                                              18    1935
XP_006710341                                                           18    1935
XP_005270404                                                           18    1935
XP_005270402                                                           18    1935
XP_005270400                                                           18    1935
XP_006710340                                                           18    1935
XP_005270398                                                           18    1935
XP_006710339                                                           18    1935
XP_006710338                                                           18    1935
NP_004949                                                              17    2528
XP_005263496                                                           17    2528
XP_005263495                                                           17    2528
NP_150253                                                              16    5631
NP_150242                                                              16    5631
NP_077320                                                              16    5631
NP_775110                                                              16    5631
NP_000061                                                              16    5631
NP_005106                                                              16    5631
NP_059447                                                              16    5631
NP_001264156                                                           16    7355
NP_003658                                                              16    7355
NP_001264155                                                           16    7355
NP_653213                                                              16    7355
XP_006722454                                                           16    7355
XP_006722451                                                           16    7355
XP_006722450                                                           16    7355
XP_006722449                                                           16    7355
XP_006722448                                                           16    7355
XP_006722447                                                           16    7355
XP_005269261                                                           16    7355
NP_001139114                                                           15    9605
NP_055502                                                              15    9605
NP_061198                                                              15    9605
NP_001159756                                                           15    9605
NP_006420                                                              15    9605
NP_001009570                                                           15    9605
NP_001159757                                                           15    9605
NP_001138944                                                           15    9605
XP_006722453                                                           15    9605
XP_006722452                                                           15    9605
XP_006720670                                                           15    9605
XP_006713894                                                           15    9605
XP_006713893                                                           15    9605
XP_006713892                                                           15    9605
XP_005269431                                                           15    9605
XP_006713891                                                           15    9605
XP_006713890                                                           15    9605
>NP_000224
          Length = 699

 Score = 21.6 bits (44), Expect =   134
 Identities = 8/9 (88%), Positives = 9/9 (100%)

Query: 1   DQKIRLRHA 9
           DQK+RLRHA
Sbjct: 475 DQKLRLRHA 483
>XP_005264366
          Length = 380

 Score = 21.6 bits (44), Expect =   134
 Identities = 8/9 (88%), Positives = 9/9 (100%)

Query: 1   DQKIRLRHA 9
           DQK+RLRHA
Sbjct: 156 DQKLRLRHA 164
>XP_006712078
          Length = 389

 Score = 21.6 bits (44), Expect =   134
 Identities = 8/9 (88%), Positives = 9/9 (100%)

Query: 1   DQKIRLRHA 9
           DQK+RLRHA
Sbjct: 165 DQKLRLRHA 173
>NP_000360
          Length = 764

 Score = 20.8 bits (42), Expect =   229
 Identities = 8/9 (88%), Positives = 9/9 (100%)

Query: 1   DQKIRLRHA 9
           D+KIRLRHA
Sbjct: 530 DRKIRLRHA 538
>XP_005268094
          Length = 764

 Score = 20.8 bits (42), Expect =   229
 Identities = 8/9 (88%), Positives = 9/9 (100%)

Query: 1   DQKIRLRHA 9
           D+KIRLRHA
Sbjct: 530 DRKIRLRHA 538
>NP_795352
          Length = 1801

 Score = 17.7 bits (34), Expect =  1935
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    DQKIRLRHA 9
            DQKIR R+A
Sbjct: 1223 DQKIRQRYA 1231
>XP_006710341
          Length = 1296

 Score = 17.7 bits (34), Expect =  1935
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    DQKIRLRHA 9
            DQKIR R+A
Sbjct: 1223 DQKIRQRYA 1231
>XP_005270404
          Length = 1300

 Score = 17.7 bits (34), Expect =  1935
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    DQKIRLRHA 9
            DQKIR R+A
Sbjct: 1223 DQKIRQRYA 1231
>XP_005270402
          Length = 1454

 Score = 17.7 bits (34), Expect =  1935
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    DQKIRLRHA 9
            DQKIR R+A
Sbjct: 1223 DQKIRQRYA 1231
>XP_005270400
          Length = 1668

 Score = 17.7 bits (34), Expect =  1935
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    DQKIRLRHA 9
            DQKIR R+A
Sbjct: 1223 DQKIRQRYA 1231
>XP_006710340
          Length = 1815

 Score = 17.7 bits (34), Expect =  1935
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    DQKIRLRHA 9
            DQKIR R+A
Sbjct: 1223 DQKIRQRYA 1231
>XP_005270398
          Length = 1882

 Score = 17.7 bits (34), Expect =  1935
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    DQKIRLRHA 9
            DQKIR R+A
Sbjct: 1223 DQKIRQRYA 1231
>XP_006710339
          Length = 1896

 Score = 17.7 bits (34), Expect =  1935
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    DQKIRLRHA 9
            DQKIR R+A
Sbjct: 1223 DQKIRQRYA 1231
>XP_006710338
          Length = 1896

 Score = 17.7 bits (34), Expect =  1935
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    DQKIRLRHA 9
            DQKIR R+A
Sbjct: 1223 DQKIRQRYA 1231
>NP_004949
          Length = 2549

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1    DQKIRLRHA 9
            D+K +LRHA
Sbjct: 1812 DEKKKLRHA 1820
>XP_005263496
          Length = 2322

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1    DQKIRLRHA 9
            D+K +LRHA
Sbjct: 1585 DEKKKLRHA 1593
>XP_005263495
          Length = 2549

 Score = 17.3 bits (33), Expect =  2528
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1    DQKIRLRHA 9
            D+K +LRHA
Sbjct: 1812 DEKKKLRHA 1820
>NP_150253
          Length = 781

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 4   IRLRHA 9
           IRLRHA
Sbjct: 618 IRLRHA 623
>NP_150242
          Length = 829

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 4   IRLRHA 9
           IRLRHA
Sbjct: 666 IRLRHA 671
>NP_077320
          Length = 815

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   DQKIRLRH 8
           D+K RL+H
Sbjct: 382 DEKARLQH 389
>NP_775110
          Length = 729

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   DQKIRLRH 8
           D+K RL+H
Sbjct: 334 DEKARLQH 341
>NP_000061
          Length = 821

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   DQKIRLRH 8
           D+K RL+H
Sbjct: 382 DEKARLQH 389
>NP_005106
          Length = 893

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 3  KIRLRHA 9
          ++RLRHA
Sbjct: 80 QVRLRHA 86
>NP_059447
          Length = 893

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 3  KIRLRHA 9
          ++RLRHA
Sbjct: 80 QVRLRHA 86
>NP_001264156
          Length = 835

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 2   QKIRLRH 8
           QKI LRH
Sbjct: 305 QKIDLRH 311
>NP_003658
          Length = 907

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 2   QKIRLRH 8
           QKI LRH
Sbjct: 377 QKIDLRH 383
>NP_001264155
          Length = 883

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 2   QKIRLRH 8
           QKI LRH
Sbjct: 353 QKIDLRH 359
>NP_653213
          Length = 2211

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 3    KIRLRH 8
            KIR+RH
Sbjct: 1088 KIRIRH 1093

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 3    KIRLRH 8
            KI+LRH
Sbjct: 1526 KIKLRH 1531
>XP_006722454
          Length = 1144

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 3  KIRLRH 8
          KIR+RH
Sbjct: 21 KIRIRH 26

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 3   KIRLRH 8
           KI+LRH
Sbjct: 459 KIKLRH 464
>XP_006722451
          Length = 1206

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 3  KIRLRH 8
          KIR+RH
Sbjct: 21 KIRIRH 26

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 3   KIRLRH 8
           KI+LRH
Sbjct: 459 KIKLRH 464
>XP_006722450
          Length = 1249

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 3   KIRLRH 8
           KIR+RH
Sbjct: 119 KIRIRH 124

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 3   KIRLRH 8
           KI+LRH
Sbjct: 557 KIKLRH 562
>XP_006722449
          Length = 1256

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 3   KIRLRH 8
           KIR+RH
Sbjct: 119 KIRIRH 124

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 3   KIRLRH 8
           KI+LRH
Sbjct: 557 KIKLRH 562
>XP_006722448
          Length = 1304

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 3   KIRLRH 8
           KIR+RH
Sbjct: 119 KIRIRH 124

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 3   KIRLRH 8
           KI+LRH
Sbjct: 557 KIKLRH 562
>XP_006722447
          Length = 1933

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 3   KIRLRH 8
           KIR+RH
Sbjct: 810 KIRIRH 815

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 3    KIRLRH 8
            KI+LRH
Sbjct: 1248 KIKLRH 1253
>XP_005269261
          Length = 833

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 2   QKIRLRH 8
           QKI LRH
Sbjct: 303 QKIDLRH 309
>NP_001139114
          Length = 927

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 2   QKIRLR 7
           QKIRLR
Sbjct: 492 QKIRLR 497
>NP_055502
          Length = 972

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 2   QKIRLR 7
           QKIRLR
Sbjct: 537 QKIRLR 542
>NP_061198
          Length = 1742

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/8 (50%), Positives = 8/8 (100%)

Query: 1    DQKIRLRH 8
            D+K++L+H
Sbjct: 1038 DEKMQLQH 1045
>NP_001159756
          Length = 456

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 3   KIRLRHA 9
           K+R RHA
Sbjct: 376 KLRARHA 382
>NP_006420
          Length = 543

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 3   KIRLRHA 9
           K+R RHA
Sbjct: 463 KLRARHA 469
>NP_001009570
          Length = 339

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 3   KIRLRHA 9
           K+R RHA
Sbjct: 259 KLRARHA 265
>NP_001159757
          Length = 499

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 3   KIRLRHA 9
           K+R RHA
Sbjct: 419 KLRARHA 425
>NP_001138944
          Length = 1114

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 3   KIRLRH 8
           KI+LRH
Sbjct: 415 KIKLRH 420
>XP_006722453
          Length = 1162

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 3   KIRLRH 8
           KI+LRH
Sbjct: 415 KIKLRH 420
>XP_006722452
          Length = 1162

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 3   KIRLRH 8
           KI+LRH
Sbjct: 415 KIKLRH 420
>XP_006720670
          Length = 1712

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/8 (50%), Positives = 8/8 (100%)

Query: 1    DQKIRLRH 8
            D+K++L+H
Sbjct: 1038 DEKMQLQH 1045
>XP_006713894
          Length = 845

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 2   QKIRLR 7
           QKIRLR
Sbjct: 385 QKIRLR 390
>XP_006713893
          Length = 845

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 2   QKIRLR 7
           QKIRLR
Sbjct: 385 QKIRLR 390
>XP_006713892
          Length = 952

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 2   QKIRLR 7
           QKIRLR
Sbjct: 492 QKIRLR 497
>XP_005269431
          Length = 987

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 2   QKIRLR 7
           QKIRLR
Sbjct: 552 QKIRLR 557
>XP_006713891
          Length = 997

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 2   QKIRLR 7
           QKIRLR
Sbjct: 537 QKIRLR 542
>XP_006713890
          Length = 1012

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 2   QKIRLR 7
           QKIRLR
Sbjct: 552 QKIRLR 557
  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.332    0.140    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 557,774
Number of extensions: 1197
Number of successful extensions: 59
Number of sequences better than 10000.0: 52
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 59
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (16.3 bits)
S2: 28 (15.4 bits)

CANCERTOPE    |     Raghava's Group    |     IMTECH    |     CSIR    |     CRDD    |     GPSR Package