Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000258 20 509 NP_001035957 20 509 XP_006721991 20 509 XP_006721990 20 509 XP_006721989 20 509 XP_005258041 20 509 XP_006721988 20 509 XP_006721987 20 509 XP_006721986 20 509 XP_005258040 20 509 XP_006721985 20 509 NP_001005493 17 3301 NP_705618 17 3301 NP_004289 17 3301 NP_001265241 17 3301 NP_001229808 17 4312 NP_001229807 17 4312 NP_001229805 17 4312 NP_001229806 17 4312 NP_001229804 17 4312 NP_060725 17 4312 NP_036257 16 5631 NP_001005490 16 5631 NP_001070254 16 5631 XP_005254198 16 5631 XP_006718388 16 5631 XP_006718387 16 5631 XP_006718386 16 5631 NP_001136095 16 7355 NP_001136094 16 7355 NP_115873 16 7355 NP_002579 16 7355 NP_115778 16 7355 NP_078934 15 9605 NP_001230925 15 9605 NP_055549 15 9605 NP_001027 15 9605 NP_653274 15 9605 NP_001004695 15 9605>NP_000258 Length = 2818 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DPLLQIVIT 9 DPLL+IVIT Sbjct: 1302 DPLLRIVIT 1310>NP_001035957 Length = 2839 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DPLLQIVIT 9 DPLL+IVIT Sbjct: 1302 DPLLRIVIT 1310>XP_006721991 Length = 1632 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DPLLQIVIT 9 DPLL+IVIT Sbjct: 1312 DPLLRIVIT 1320>XP_006721990 Length = 2823 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DPLLQIVIT 9 DPLL+IVIT Sbjct: 1312 DPLLRIVIT 1320>XP_006721989 Length = 2823 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DPLLQIVIT 9 DPLL+IVIT Sbjct: 1312 DPLLRIVIT 1320>XP_005258041 Length = 2836 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DPLLQIVIT 9 DPLL+IVIT Sbjct: 1302 DPLLRIVIT 1310>XP_006721988 Length = 2846 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DPLLQIVIT 9 DPLL+IVIT Sbjct: 1312 DPLLRIVIT 1320>XP_006721987 Length = 2849 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DPLLQIVIT 9 DPLL+IVIT Sbjct: 1312 DPLLRIVIT 1320>XP_006721986 Length = 2854 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DPLLQIVIT 9 DPLL+IVIT Sbjct: 1299 DPLLRIVIT 1307>XP_005258040 Length = 2857 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DPLLQIVIT 9 DPLL+IVIT Sbjct: 1302 DPLLRIVIT 1310>XP_006721985 Length = 2867 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DPLLQIVIT 9 DPLL+IVIT Sbjct: 1312 DPLLRIVIT 1320>NP_001005493 Length = 314 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 DPLLQIVI 8 DP LQIVI Sbjct: 18 DPQLQIVI 25>NP_705618 Length = 1391 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DPLLQIVI 8 DP+LQI I Sbjct: 277 DPILQIAI 284>NP_004289 Length = 1332 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DPLLQIVI 8 DP+LQI I Sbjct: 218 DPILQIAI 225>NP_001265241 Length = 1327 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DPLLQIVI 8 DP+LQI I Sbjct: 277 DPILQIAI 284>NP_001229808 Length = 756 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DPLLQIVIT 9 DPL ++V+T Sbjct: 44 DPLKRVVVT 52>NP_001229807 Length = 756 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DPLLQIVIT 9 DPL ++V+T Sbjct: 44 DPLKRVVVT 52>NP_001229805 Length = 821 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DPLLQIVIT 9 DPL ++V+T Sbjct: 44 DPLKRVVVT 52>NP_001229806 Length = 800 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DPLLQIVIT 9 DPL ++V+T Sbjct: 44 DPLKRVVVT 52>NP_001229804 Length = 891 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DPLLQIVIT 9 DPL ++V+T Sbjct: 44 DPLKRVVVT 52>NP_060725 Length = 826 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DPLLQIVIT 9 DPL ++V+T Sbjct: 44 DPLKRVVVT 52>NP_036257 Length = 532 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DPLLQIV 7 DP+LQ+V Sbjct: 318 DPVLQVV 324>NP_001005490 Length = 312 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 DPLLQIVI 8 DP LQ++I Sbjct: 18 DPQLQVII 25>NP_001070254 Length = 1735 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 DPLLQI 6 DPLLQI Sbjct: 97 DPLLQI 102>XP_005254198 Length = 532 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DPLLQIV 7 DP+LQ+V Sbjct: 318 DPVLQVV 324>XP_006718388 Length = 1331 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 DPLLQI 6 DPLLQI Sbjct: 160 DPLLQI 165>XP_006718387 Length = 1798 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 DPLLQI 6 DPLLQI Sbjct: 160 DPLLQI 165>XP_006718386 Length = 1822 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 DPLLQI 6 DPLLQI Sbjct: 160 DPLLQI 165>NP_001136095 Length = 474 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 PLLQIVIT 9 P LQ+V+T Sbjct: 257 PKLQVVVT 264>NP_001136094 Length = 491 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 PLLQIVIT 9 P LQ+V+T Sbjct: 218 PKLQVVVT 225>NP_115873 Length = 530 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 PLLQIVIT 9 P LQ+V+T Sbjct: 257 PKLQVVVT 264>NP_002579 Length = 934 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DPLLQIVIT 9 +P LQ+V+T Sbjct: 207 EPSLQLVLT 215>NP_115778 Length = 863 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DPLLQIVIT 9 +P LQ+V+T Sbjct: 207 EPSLQLVLT 215>NP_078934 Length = 1081 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 PLLQIV 7 PLLQIV Sbjct: 394 PLLQIV 399>NP_001230925 Length = 4865 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 DPLLQIVI 8 DPL QI++ Sbjct: 3546 DPLHQIIL 3553>NP_055549 Length = 303 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DPLLQIVIT 9 DP +QIV++ Sbjct: 193 DPRVQIVLS 201>NP_001027 Length = 4870 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 DPLLQIVI 8 DPL QI++ Sbjct: 3551 DPLHQIIL 3558>NP_653274 Length = 248 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 PLLQIVIT 9 P+L+++IT Sbjct: 112 PILRLIIT 119>NP_001004695 Length = 320 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DPLLQIVIT 9 D LLQ V+T Sbjct: 153 DGLLQAVVT 161Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.329 0.153 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 480,494 Number of extensions: 698 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |