Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_036462 18 1935 NP_001243397 18 1935 XP_005269721 18 1935 NP_443100 16 5631 NP_001193594 16 5631 XP_006711694 16 5631 XP_005245671 16 5631 NP_037444 15 9605 NP_001093646 15 9605 XP_005259931 15 9605 XP_005259930 15 9605>NP_036462 Length = 2073 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DLSSRLAVT 9 D SSRLAVT Sbjct: 394 DSSSRLAVT 402>NP_001243397 Length = 1890 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DLSSRLAVT 9 D SSRLAVT Sbjct: 394 DSSSRLAVT 402>XP_005269721 Length = 2073 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DLSSRLAVT 9 D SSRLAVT Sbjct: 394 DSSSRLAVT 402>NP_443100 Length = 613 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSRLAVT 9 LSS+LAVT Sbjct: 301 LSSQLAVT 308>NP_001193594 Length = 613 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSRLAVT 9 LSS+LAVT Sbjct: 301 LSSQLAVT 308>XP_006711694 Length = 596 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSRLAVT 9 LSS+LAVT Sbjct: 284 LSSQLAVT 291>XP_005245671 Length = 613 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 LSSRLAVT 9 LSS+LAVT Sbjct: 301 LSSQLAVT 308>NP_037444 Length = 719 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 DLSSRLAV 8 DLSS LAV Sbjct: 30 DLSSGLAV 37>NP_001093646 Length = 717 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 DLSSRLAV 8 DLSS LAV Sbjct: 30 DLSSGLAV 37>XP_005259931 Length = 716 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 DLSSRLAV 8 DLSS LAV Sbjct: 30 DLSSGLAV 37>XP_005259930 Length = 718 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 DLSSRLAV 8 DLSS LAV Sbjct: 30 DLSSGLAV 37Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.313 0.122 0.286 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 246,632 Number of extensions: 241 Number of successful extensions: 11 Number of sequences better than 10000.0: 11 Number of HSP's gapped: 11 Number of HSP's successfully gapped: 11 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |