Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001073893 18 1935 XP_006721547 18 1935 XP_005256611 18 1935 XP_005256609 18 1935 XP_005256607 18 1935 XP_005256608 18 1935 XP_006721546 18 1935 XP_005256606 18 1935 XP_005269073 17 4312 NP_001004334 16 7355 NP_149072 16 7355 NP_001180298 16 7355>NP_001073893 Length = 1682 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 DLRQSSVQR 9 DLR+S VQR Sbjct: 359 DLRESRVQR 367>XP_006721547 Length = 1638 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 DLRQSSVQR 9 DLR+S VQR Sbjct: 359 DLRESRVQR 367>XP_005256611 Length = 1643 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 DLRQSSVQR 9 DLR+S VQR Sbjct: 359 DLRESRVQR 367>XP_005256609 Length = 1682 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 DLRQSSVQR 9 DLR+S VQR Sbjct: 359 DLRESRVQR 367>XP_005256607 Length = 1682 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 DLRQSSVQR 9 DLR+S VQR Sbjct: 359 DLRESRVQR 367>XP_005256608 Length = 1682 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 DLRQSSVQR 9 DLR+S VQR Sbjct: 359 DLRESRVQR 367>XP_006721546 Length = 1682 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 DLRQSSVQR 9 DLR+S VQR Sbjct: 359 DLRESRVQR 367>XP_005256606 Length = 1682 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 DLRQSSVQR 9 DLR+S VQR Sbjct: 359 DLRESRVQR 367>XP_005269073 Length = 173 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DLRQSSVQR 9 DLR S+QR Sbjct: 40 DLRPKSIQR 48>NP_001004334 Length = 2367 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 DLRQSSVQ 8 D+R+SSV+ Sbjct: 117 DIRESSVE 124>NP_149072 Length = 2240 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 DLRQSSVQR 9 D+R++SV+R Sbjct: 1451 DVRRNSVER 1459>NP_001180298 Length = 2240 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 DLRQSSVQR 9 D+R++SV+R Sbjct: 1451 DVRRNSVER 1459Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.314 0.122 0.290 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 316,831 Number of extensions: 390 Number of successful extensions: 12 Number of sequences better than 10000.0: 12 Number of HSP's gapped: 12 Number of HSP's successfully gapped: 12 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |