Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001245210 19 665 NP_000242 19 665 XP_005264389 19 665 NP_056263 17 4312 XP_006717808 17 4312 NP_008971 16 7355 NP_001229338 16 7355 NP_653333 16 7355 NP_073588 16 7355 XP_005258523 16 7355 XP_005258522 16 7355 XP_005258520 16 7355 XP_005258521 16 7355 XP_005258519 16 7355 XP_005258518 16 7355 XP_005258516 16 7355 NP_689807 15 9605 NP_001013725 15 9605 NP_064608 15 9605 XP_005254450 15 9605 XP_005254449 15 9605 XP_005254260 15 9605 XP_005254259 15 9605>NP_001245210 Length = 868 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LLVRQYRV 9 LLVRQYRV Sbjct: 27 LLVRQYRV 34>NP_000242 Length = 934 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LLVRQYRV 9 LLVRQYRV Sbjct: 93 LLVRQYRV 100>XP_005264389 Length = 921 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LLVRQYRV 9 LLVRQYRV Sbjct: 93 LLVRQYRV 100>NP_056263 Length = 203 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 DLLVRQYRV 9 +LLVR++RV Sbjct: 46 ELLVRKWRV 54>XP_006717808 Length = 373 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 DLLVRQYRV 9 +LLVR++RV Sbjct: 216 ELLVRKWRV 224>NP_008971 Length = 856 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 DLLVRQY 7 D LVRQY Sbjct: 588 DKLVRQY 594>NP_001229338 Length = 876 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DLLVRQYRV 9 DLLV YR+ Sbjct: 24 DLLVSTYRL 32>NP_653333 Length = 756 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 DLLVRQY 7 D LVRQY Sbjct: 488 DKLVRQY 494>NP_073588 Length = 875 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DLLVRQYRV 9 DLLV YR+ Sbjct: 24 DLLVSTYRL 32>XP_005258523 Length = 756 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 DLLVRQY 7 D LVRQY Sbjct: 488 DKLVRQY 494>XP_005258522 Length = 766 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 DLLVRQY 7 D LVRQY Sbjct: 488 DKLVRQY 494>XP_005258520 Length = 766 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 DLLVRQY 7 D LVRQY Sbjct: 488 DKLVRQY 494>XP_005258521 Length = 766 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 DLLVRQY 7 D LVRQY Sbjct: 488 DKLVRQY 494>XP_005258519 Length = 767 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 DLLVRQY 7 D LVRQY Sbjct: 499 DKLVRQY 505>XP_005258518 Length = 777 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 DLLVRQY 7 D LVRQY Sbjct: 499 DKLVRQY 505>XP_005258516 Length = 866 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 DLLVRQY 7 D LVRQY Sbjct: 588 DKLVRQY 594>NP_689807 Length = 444 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 DLLVRQY 7 D+L+R+Y Sbjct: 252 DILIRRY 258>NP_001013725 Length = 1649 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 DLLVRQYR 8 DLL+ Q+R Sbjct: 1353 DLLIPQFR 1360>NP_064608 Length = 584 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLVRQYRV 9 +LVR++RV Sbjct: 4 MLVRRFRV 11>XP_005254450 Length = 1505 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 DLLVRQYR 8 DLL+ Q+R Sbjct: 1353 DLLIPQFR 1360>XP_005254449 Length = 1626 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 DLLVRQYR 8 DLL+ Q+R Sbjct: 1353 DLLIPQFR 1360>XP_005254260 Length = 370 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 DLLVRQY 7 D+L+R+Y Sbjct: 178 DILIRRY 184>XP_005254259 Length = 456 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 DLLVRQY 7 D+L+R+Y Sbjct: 264 DILIRRY 270Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.340 0.155 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 441,112 Number of extensions: 859 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |