Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115803 20 390 NP_055717 17 3301 XP_005260386 17 3301 NP_443171 17 4312 NP_112572 17 4312 XP_006726167 17 4312 XP_006726072 17 4312 XP_006725979 17 4312 XP_006725887 17 4312 XP_006725770 17 4312 XP_006725556 17 4312 XP_006715213 17 4312 XP_006711210 17 4312 XP_006711209 17 4312 XP_005244929 17 4312 XP_006711208 17 4312 NP_001073991 16 5631 NP_065836 16 5631 NP_001158192 16 5631 NP_705838 16 5631 NP_612429 16 5631 NP_573420 16 5631 NP_573419 16 5631 NP_573418 16 5631 NP_006042 16 5631 NP_071371 16 5631 NP_060667 16 5631 NP_955458 16 5631 XP_005260506 16 5631 XP_006723884 16 5631 XP_005267356 16 5631 XP_006714033 16 5631 XP_005248236 16 5631 XP_005248234 16 5631 NP_542194 16 7355 NP_689488 16 7355 NP_000290 15 9605 NP_001005337 15 9605 NP_055778 15 9605 NP_001093592 15 9605 XP_005259577 15 9605 XP_005259576 15 9605>NP_115803 Length = 1156 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DLGRQSQRS 9 DLG+QSQRS Sbjct: 343 DLGQQSQRS 351>NP_055717 Length = 989 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LGRQSQRS 9 LGRQ++RS Sbjct: 230 LGRQAERS 237>XP_005260386 Length = 992 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LGRQSQRS 9 LGRQ++RS Sbjct: 230 LGRQAERS 237>NP_443171 Length = 734 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LGRQSQRS 9 LGR++QRS Sbjct: 331 LGRKTQRS 338>NP_112572 Length = 515 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LGRQSQRS 9 LGR++QRS Sbjct: 332 LGRKTQRS 339>XP_006726167 Length = 156 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LGRQSQRS 9 +GR SQRS Sbjct: 1 MGRSSQRS 8>XP_006726072 Length = 156 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LGRQSQRS 9 +GR SQRS Sbjct: 1 MGRSSQRS 8>XP_006725979 Length = 156 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LGRQSQRS 9 +GR SQRS Sbjct: 1 MGRSSQRS 8>XP_006725887 Length = 156 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LGRQSQRS 9 +GR SQRS Sbjct: 1 MGRSSQRS 8>XP_006725770 Length = 156 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LGRQSQRS 9 +GR SQRS Sbjct: 1 MGRSSQRS 8>XP_006725556 Length = 156 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LGRQSQRS 9 +GR SQRS Sbjct: 1 MGRSSQRS 8>XP_006715213 Length = 156 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LGRQSQRS 9 +GR SQRS Sbjct: 1 MGRSSQRS 8>XP_006711210 Length = 485 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LGRQSQRS 9 LGR++QRS Sbjct: 82 LGRKTQRS 89>XP_006711209 Length = 613 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LGRQSQRS 9 LGR++QRS Sbjct: 331 LGRKTQRS 338>XP_005244929 Length = 647 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LGRQSQRS 9 LGR++QRS Sbjct: 244 LGRKTQRS 251>XP_006711208 Length = 734 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LGRQSQRS 9 LGR++QRS Sbjct: 331 LGRKTQRS 338>NP_001073991 Length = 1620 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DLGRQSQRS 9 D+GRQ++ S Sbjct: 23 DMGRQNKNS 31>NP_065836 Length = 122 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DLGRQSQRS 9 D+GRQ++ S Sbjct: 23 DMGRQNKNS 31>NP_001158192 Length = 111 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DLGRQSQRS 9 D+GRQ++ S Sbjct: 23 DMGRQNKNS 31>NP_705838 Length = 4069 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 DLGRQS 6 DLGRQS Sbjct: 1644 DLGRQS 1649>NP_612429 Length = 5795 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 GRQSQR 8 GRQSQR Sbjct: 251 GRQSQR 256>NP_573420 Length = 484 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 DLGRQS 6 DLGRQS Sbjct: 377 DLGRQS 382>NP_573419 Length = 486 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 DLGRQS 6 DLGRQS Sbjct: 379 DLGRQS 384>NP_573418 Length = 491 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 DLGRQS 6 DLGRQS Sbjct: 384 DLGRQS 389>NP_006042 Length = 493 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 DLGRQS 6 DLGRQS Sbjct: 386 DLGRQS 391>NP_071371 Length = 627 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 DLGRQSQR 8 D GRQS R Sbjct: 353 DTGRQSSR 360>NP_060667 Length = 681 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 DLGRQSQR 8 D GRQS R Sbjct: 407 DTGRQSSR 414>NP_955458 Length = 679 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 DLGRQSQR 8 D GRQS R Sbjct: 405 DTGRQSSR 412>XP_005260506 Length = 523 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 DLGRQSQR 8 D GRQS R Sbjct: 249 DTGRQSSR 256>XP_006723884 Length = 625 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 DLGRQSQR 8 D GRQS R Sbjct: 351 DTGRQSSR 358>XP_005267356 Length = 5695 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 GRQSQR 8 GRQSQR Sbjct: 151 GRQSQR 156>XP_006714033 Length = 111 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DLGRQSQRS 9 D+GRQ++ S Sbjct: 23 DMGRQNKNS 31>XP_005248236 Length = 1262 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DLGRQSQRS 9 D+GRQ++ S Sbjct: 23 DMGRQNKNS 31>XP_005248234 Length = 1620 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DLGRQSQRS 9 D+GRQ++ S Sbjct: 23 DMGRQNKNS 31>NP_542194 Length = 1661 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 GRQSQRS 9 GRQ QRS Sbjct: 1235 GRQMQRS 1241>NP_689488 Length = 665 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LGRQSQRS 9 LGR+ QRS Sbjct: 34 LGRELQRS 41>NP_000290 Length = 747 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 DLGRQSQRS 9 D GRQ+ R+ Sbjct: 438 DAGRQTMRN 446>NP_001005337 Length = 726 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 DLGRQSQRS 9 D GRQ+ R+ Sbjct: 417 DAGRQTMRN 425>NP_055778 Length = 1366 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DLGRQSQ 7 ++GRQSQ Sbjct: 1097 NIGRQSQ 1103>NP_001093592 Length = 1309 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DLGRQSQ 7 ++GRQSQ Sbjct: 1040 NIGRQSQ 1046>XP_005259577 Length = 1366 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DLGRQSQ 7 ++GRQSQ Sbjct: 1097 NIGRQSQ 1103>XP_005259576 Length = 1366 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DLGRQSQ 7 ++GRQSQ Sbjct: 1097 NIGRQSQ 1103Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.309 0.123 0.316 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 446,253 Number of extensions: 442 Number of successful extensions: 42 Number of sequences better than 10000.0: 42 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 42 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |