Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006209 20 299 XP_006713721 20 299 NP_057121 19 869 NP_115536 16 7355 NP_005518 15 9605 NP_000249 15 9605 NP_659433 15 9605 NP_001167622 15 9605 NP_001167621 15 9605 NP_878899 15 9605 NP_038477 15 9605 NP_001072990 15 9605 NP_001257943 15 9605 NP_919278 15 9605 NP_004977 15 9605 XP_005275459 15 9605 XP_005275458 15 9605 XP_005275456 15 9605 XP_005275031 15 9605 XP_005275030 15 9605 XP_005275027 15 9605 XP_005272874 15 9605 XP_005272873 15 9605 XP_005272870 15 9605 XP_005274919 15 9605 XP_005274918 15 9605 XP_005274916 15 9605 XP_006720204 15 9605 XP_006720203 15 9605 XP_006720202 15 9605 XP_006720201 15 9605 XP_006719271 15 9605 XP_005268661 15 9605 XP_005268660 15 9605 XP_005268659 15 9605 XP_005268657 15 9605 XP_006719270 15 9605 XP_005268656 15 9605 XP_005268654 15 9605 XP_005268653 15 9605 XP_005249128 15 9605 XP_005249130 15 9605 XP_005249127 15 9605 XP_006713597 15 9605 XP_006713596 15 9605 XP_006713595 15 9605 XP_006713594 15 9605 NP_001072989 15 9605>NP_006209 Length = 1068 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DKTQKVQMK 9 D+TQKVQMK Sbjct: 725 DETQKVQMK 733>XP_006713721 Length = 1068 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DKTQKVQMK 9 D+TQKVQMK Sbjct: 725 DETQKVQMK 733>NP_057121 Length = 253 Score = 18.9 bits (37), Expect = 869 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 DKTQKVQMK 9 DKTQKV++K Sbjct: 227 DKTQKVKVK 235>NP_115536 Length = 1222 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 KTQKVQ 7 KTQKVQ Sbjct: 53 KTQKVQ 58>NP_005518 Length = 641 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DKTQKVQ 7 DK++KVQ Sbjct: 385 DKSEKVQ 391>NP_000249 Length = 195 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 DKTQKVQMK 9 D+T K +MK Sbjct: 62 DRTPKCEMK 70>NP_659433 Length = 321 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KTQKVQMK 9 KT+K++MK Sbjct: 240 KTKKLRMK 247>NP_001167622 Length = 325 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KTQKVQMK 9 KT+K++MK Sbjct: 244 KTKKLRMK 251>NP_001167621 Length = 428 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KTQKVQMK 9 KT+K++MK Sbjct: 347 KTKKLRMK 354>NP_878899 Length = 428 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KTQKVQMK 9 KT+K++MK Sbjct: 347 KTKKLRMK 354>NP_038477 Length = 1905 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DKTQKVQMK 9 +K +KV+MK Sbjct: 775 EKKEKVKMK 783>NP_001072990 Length = 1306 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KTQKVQMK 9 +TQ++QMK Sbjct: 400 ETQQMQMK 407>NP_001257943 Length = 1329 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KTQKVQMK 9 +TQ++QMK Sbjct: 400 ETQQMQMK 407>NP_919278 Length = 1925 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DKTQKVQ 7 +KTQKV+ Sbjct: 11 EKTQKVE 17>NP_004977 Length = 1300 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KTQKVQMK 9 +TQ++QMK Sbjct: 400 ETQQMQMK 407>XP_005275459 Length = 641 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DKTQKVQ 7 DK++KVQ Sbjct: 385 DKSEKVQ 391>XP_005275458 Length = 641 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DKTQKVQ 7 DK++KVQ Sbjct: 385 DKSEKVQ 391>XP_005275456 Length = 705 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DKTQKVQ 7 DK++KVQ Sbjct: 449 DKSEKVQ 455>XP_005275031 Length = 641 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DKTQKVQ 7 DK++KVQ Sbjct: 385 DKSEKVQ 391>XP_005275030 Length = 641 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DKTQKVQ 7 DK++KVQ Sbjct: 385 DKSEKVQ 391>XP_005275027 Length = 705 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DKTQKVQ 7 DK++KVQ Sbjct: 449 DKSEKVQ 455>XP_005272874 Length = 641 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DKTQKVQ 7 DK++KVQ Sbjct: 385 DKSEKVQ 391>XP_005272873 Length = 641 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DKTQKVQ 7 DK++KVQ Sbjct: 385 DKSEKVQ 391>XP_005272870 Length = 705 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DKTQKVQ 7 DK++KVQ Sbjct: 449 DKSEKVQ 455>XP_005274919 Length = 641 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DKTQKVQ 7 DK++KVQ Sbjct: 385 DKSEKVQ 391>XP_005274918 Length = 641 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DKTQKVQ 7 DK++KVQ Sbjct: 385 DKSEKVQ 391>XP_005274916 Length = 705 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DKTQKVQ 7 DK++KVQ Sbjct: 449 DKSEKVQ 455>XP_006720204 Length = 1298 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KTQKVQMK 9 +TQ++QMK Sbjct: 400 ETQQMQMK 407>XP_006720203 Length = 1328 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KTQKVQMK 9 +TQ++QMK Sbjct: 400 ETQQMQMK 407>XP_006720202 Length = 1329 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KTQKVQMK 9 +TQ++QMK Sbjct: 400 ETQQMQMK 407>XP_006720201 Length = 1357 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KTQKVQMK 9 +TQ++QMK Sbjct: 400 ETQQMQMK 407>XP_006719271 Length = 1555 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DKTQKVQMK 9 +K +KV+MK Sbjct: 794 EKKEKVKMK 802>XP_005268661 Length = 1657 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DKTQKVQMK 9 +K +KV+MK Sbjct: 527 EKKEKVKMK 535>XP_005268660 Length = 1875 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DKTQKVQMK 9 +K +KV+MK Sbjct: 745 EKKEKVKMK 753>XP_005268659 Length = 1894 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DKTQKVQMK 9 +K +KV+MK Sbjct: 764 EKKEKVKMK 772>XP_005268657 Length = 1903 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DKTQKVQMK 9 +K +KV+MK Sbjct: 773 EKKEKVKMK 781>XP_006719270 Length = 1903 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DKTQKVQMK 9 +K +KV+MK Sbjct: 773 EKKEKVKMK 781>XP_005268656 Length = 1903 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DKTQKVQMK 9 +K +KV+MK Sbjct: 773 EKKEKVKMK 781>XP_005268654 Length = 1923 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DKTQKVQMK 9 +K +KV+MK Sbjct: 794 EKKEKVKMK 802>XP_005268653 Length = 1924 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DKTQKVQMK 9 +K +KV+MK Sbjct: 794 EKKEKVKMK 802>XP_005249128 Length = 641 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DKTQKVQ 7 DK++KVQ Sbjct: 385 DKSEKVQ 391>XP_005249130 Length = 641 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DKTQKVQ 7 DK++KVQ Sbjct: 385 DKSEKVQ 391>XP_005249127 Length = 705 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DKTQKVQ 7 DK++KVQ Sbjct: 449 DKSEKVQ 455>XP_006713597 Length = 403 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KTQKVQMK 9 KT+K++MK Sbjct: 322 KTKKLRMK 329>XP_006713596 Length = 403 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KTQKVQMK 9 KT+K++MK Sbjct: 322 KTKKLRMK 329>XP_006713595 Length = 413 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KTQKVQMK 9 KT+K++MK Sbjct: 332 KTKKLRMK 339>XP_006713594 Length = 413 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KTQKVQMK 9 KT+K++MK Sbjct: 332 KTKKLRMK 339>NP_001072989 Length = 1357 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 KTQKVQMK 9 +TQ++QMK Sbjct: 400 ETQQMQMK 407Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.303 0.113 0.272 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 400,761 Number of extensions: 646 Number of successful extensions: 48 Number of sequences better than 10000.0: 48 Number of HSP's gapped: 48 Number of HSP's successfully gapped: 48 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |