Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006715 19 869 NP_005913 19 869 XP_005267046 19 869 XP_005267045 19 869 NP_036553 16 5631 NP_000050 16 7355 NP_001028196 16 7355 NP_036311 16 7355 NP_001244919 16 7355 NP_064450 16 7355 NP_006730 16 7355 NP_001245343 16 7355 XP_006724305 16 7355 XP_005255138 16 7355 XP_005273257 16 7355 NP_055203 15 9605 NP_005344 15 9605 NP_001008528 15 9605 NP_060009 15 9605 NP_001157888 15 9605 XP_006724703 15 9605 XP_005257439 15 9605 XP_006721125 15 9605 XP_006711338 15 9605 NP_001094800 15 9605>NP_006715 Length = 1558 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 IQKSVRLF 9 IQKSVRLF Sbjct: 1247 IQKSVRLF 1254>NP_005913 Length = 1608 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 IQKSVRLF 9 IQKSVRLF Sbjct: 1297 IQKSVRLF 1304>XP_005267046 Length = 1554 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 IQKSVRLF 9 IQKSVRLF Sbjct: 1243 IQKSVRLF 1250>XP_005267045 Length = 1604 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 IQKSVRLF 9 IQKSVRLF Sbjct: 1293 IQKSVRLF 1300>NP_036553 Length = 1914 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 DIQKSVRL 8 DI+KSV+L Sbjct: 833 DIKKSVKL 840>NP_000050 Length = 3418 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 IQKSVRLF 9 +QK+V+LF Sbjct: 1234 LQKAVKLF 1241>NP_001028196 Length = 443 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DIQKSVRLF 9 D+QK RLF Sbjct: 221 DLQKLSRLF 229>NP_036311 Length = 522 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DIQKSVRLF 9 D+QK RLF Sbjct: 300 DLQKLSRLF 308>NP_001244919 Length = 408 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DIQKSVRLF 9 D+QK RLF Sbjct: 186 DLQKLSRLF 194>NP_064450 Length = 1722 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 DIQKSVRL 8 DIQ+++RL Sbjct: 198 DIQQAIRL 205>NP_006730 Length = 734 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 DIQKSVRLF 9 D+++++RLF Sbjct: 636 DVEEALRLF 644>NP_001245343 Length = 519 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DIQKSVRLF 9 D+Q+ +RLF Sbjct: 216 DLQQPLRLF 224>XP_006724305 Length = 732 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 DIQKSVRLF 9 D+++++RLF Sbjct: 636 DVEEALRLF 644>XP_005255138 Length = 583 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DIQKSVRLF 9 D+Q+ +RLF Sbjct: 280 DLQQPLRLF 288>XP_005273257 Length = 1726 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 DIQKSVRL 8 DIQ+++RL Sbjct: 198 DIQQAIRL 205>NP_055203 Length = 756 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 IQKSVRLF 9 +Q+S+RL+ Sbjct: 432 LQRSIRLY 439>NP_005344 Length = 1161 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 DIQKSVR 7 DIQ SVR Sbjct: 667 DIQSSVR 673>NP_001008528 Length = 204 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 DIQKSVRLF 9 D+Q+ +RL+ Sbjct: 194 DVQEQLRLY 202>NP_060009 Length = 4116 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 DIQKSVRLF 9 D++K +RL+ Sbjct: 2295 DVEKCIRLW 2303>NP_001157888 Length = 154 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DIQKSVRL 8 DIQ +VRL Sbjct: 116 DIQMAVRL 123>XP_006724703 Length = 154 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DIQKSVRL 8 DIQ +VRL Sbjct: 116 DIQMAVRL 123>XP_005257439 Length = 247 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 DIQKSVRLF 9 D+Q+ +RL+ Sbjct: 237 DVQEQLRLY 245>XP_006721125 Length = 4070 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 DIQKSVRLF 9 D++K +RL+ Sbjct: 2249 DVEKCIRLW 2257>XP_006711338 Length = 568 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 IQKSVRLF 9 +Q+S+RL+ Sbjct: 432 LQRSIRLY 439>NP_001094800 Length = 315 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 DIQKSVRLF 9 ++ KS+R+F Sbjct: 63 ELSKSIRVF 71Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.334 0.147 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 290,813 Number of extensions: 309 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |