Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 20 390 XP_006716142 20 390 XP_005250088 20 390 XP_006716141 20 390 XP_005250085 20 390 XP_006716140 20 390 XP_005250084 20 390 XP_005250083 20 390 XP_005250082 20 390 NP_003473 18 1135 XP_006719679 18 1135 XP_005269219 18 1135 XP_006719678 18 1135 XP_006719677 18 1135 NP_777573 18 1935 XP_005267442 18 1935 XP_005249571 17 2528 XP_005254804 17 3301 XP_006720791 17 3301 XP_005254803 17 3301 XP_005254800 17 3301 XP_005254799 17 3301 NP_003913 17 3301 NP_002941 17 4312 NP_001120652 16 5631 NP_000251 16 5631 XP_006718624 16 5631 XP_005274069 16 5631 XP_006718623 16 5631 XP_006718622 16 5631 XP_006718621 16 5631 NP_004860 15 9605 NP_066961 15 9605 XP_006722645 15 9605 XP_005253668 15 9605 XP_005253667 15 9605 XP_005253666 15 9605 XP_005266156 15 9605 NP_076417 15 9605>NP_733751 Length = 4911 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DHVIDAMLT 9 DHVIDA LT Sbjct: 4832 DHVIDATLT 4840>XP_006716142 Length = 4927 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DHVIDAMLT 9 DHVIDA LT Sbjct: 4848 DHVIDATLT 4856>XP_005250088 Length = 4928 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DHVIDAMLT 9 DHVIDA LT Sbjct: 4849 DHVIDATLT 4857>XP_006716141 Length = 4959 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DHVIDAMLT 9 DHVIDA LT Sbjct: 4880 DHVIDATLT 4888>XP_005250085 Length = 4979 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DHVIDAMLT 9 DHVIDA LT Sbjct: 4900 DHVIDATLT 4908>XP_006716140 Length = 4982 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DHVIDAMLT 9 DHVIDA LT Sbjct: 4903 DHVIDATLT 4911>XP_005250084 Length = 4982 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DHVIDAMLT 9 DHVIDA LT Sbjct: 4903 DHVIDATLT 4911>XP_005250083 Length = 4982 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DHVIDAMLT 9 DHVIDA LT Sbjct: 4903 DHVIDATLT 4911>XP_005250082 Length = 4983 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DHVIDAMLT 9 DHVIDA LT Sbjct: 4904 DHVIDATLT 4912>NP_003473 Length = 5537 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 DHVIDAMLT 9 +HVIDA LT Sbjct: 5458 EHVIDATLT 5466>XP_006719679 Length = 5536 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 DHVIDAMLT 9 +HVIDA LT Sbjct: 5457 EHVIDATLT 5465>XP_005269219 Length = 5537 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 DHVIDAMLT 9 +HVIDA LT Sbjct: 5458 EHVIDATLT 5466>XP_006719678 Length = 5539 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 DHVIDAMLT 9 +HVIDA LT Sbjct: 5460 EHVIDATLT 5468>XP_006719677 Length = 5540 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 DHVIDAMLT 9 +HVIDA LT Sbjct: 5461 EHVIDATLT 5469>NP_777573 Length = 636 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 HVIDAMLT 9 HV+DA+LT Sbjct: 525 HVLDAILT 532>XP_005267442 Length = 650 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 HVIDAMLT 9 HV+DA+LT Sbjct: 539 HVLDAILT 546>XP_005249571 Length = 566 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 HVIDAMLT 9 HVID +LT Sbjct: 54 HVIDGLLT 61>XP_005254804 Length = 4796 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DHVIDAMLT 9 DH +DA+L+ Sbjct: 76 DHYLDALLS 84>XP_006720791 Length = 4853 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DHVIDAMLT 9 DH +DA+L+ Sbjct: 76 DHYLDALLS 84>XP_005254803 Length = 4854 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DHVIDAMLT 9 DH +DA+L+ Sbjct: 76 DHYLDALLS 84>XP_005254800 Length = 4861 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DHVIDAMLT 9 DH +DA+L+ Sbjct: 76 DHYLDALLS 84>XP_005254799 Length = 4861 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DHVIDAMLT 9 DH +DA+L+ Sbjct: 76 DHYLDALLS 84>NP_003913 Length = 4861 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 DHVIDAMLT 9 DH +DA+L+ Sbjct: 76 DHYLDALLS 84>NP_002941 Length = 607 Score = 16.5 bits (31), Expect = 4312 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 DHVIDAM 7 DH++DA+ Sbjct: 601 DHILDAL 607>NP_001120652 Length = 2175 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DHVIDAM 7 DHV+DA+ Sbjct: 1317 DHVMDAI 1323>NP_000251 Length = 2215 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DHVIDAM 7 DHV+DA+ Sbjct: 1317 DHVMDAI 1323>XP_006718624 Length = 2177 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DHVIDAM 7 DHV+DA+ Sbjct: 1317 DHVMDAI 1323>XP_005274069 Length = 2176 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DHVIDAM 7 DHV+DA+ Sbjct: 1317 DHVMDAI 1323>XP_006718623 Length = 2189 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DHVIDAM 7 DHV+DA+ Sbjct: 1317 DHVMDAI 1323>XP_006718622 Length = 2190 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DHVIDAM 7 DHV+DA+ Sbjct: 1317 DHVMDAI 1323>XP_006718621 Length = 2225 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DHVIDAM 7 DHV+DA+ Sbjct: 1353 DHVMDAI 1359>NP_004860 Length = 444 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 DHVIDAMLT 9 +H++D +LT Sbjct: 374 NHLVDDLLT 382>NP_066961 Length = 501 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 DHVIDA 6 +HVIDA Sbjct: 441 EHVIDA 446>XP_006722645 Length = 326 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 DHVIDAMLT 9 +H++D +LT Sbjct: 256 NHLVDDLLT 264>XP_005253668 Length = 420 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 DHVIDAML 8 +H ++AML Sbjct: 164 EHAVEAML 171>XP_005253667 Length = 599 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 DHVIDAML 8 +H ++AML Sbjct: 164 EHAVEAML 171>XP_005253666 Length = 631 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 DHVIDAML 8 +H ++AML Sbjct: 164 EHAVEAML 171>XP_005266156 Length = 533 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 DHVIDA 6 +HVIDA Sbjct: 473 EHVIDA 478>NP_076417 Length = 672 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 DHVIDAML 8 +H ++AML Sbjct: 164 EHAVEAML 171Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.329 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 418,882 Number of extensions: 617 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |