Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_002430 22 103 NP_001673 16 5631 XP_005268976 16 5631 NP_001159890 16 7355 NP_060956 16 7355 NP_002652 16 7355 NP_001136157 16 7355 NP_055530 16 7355 NP_001177984 16 7355 XP_006724736 16 7355 XP_006724735 16 7355 XP_006719010 16 7355 XP_005271793 16 7355 XP_005249650 16 7355 XP_005249649 16 7355 NP_689686 16 7355 NP_031368 16 7355 NP_073585 15 9605 NP_542415 15 9605 NP_542416 15 9605 NP_542414 15 9605 NP_006255 15 9605 NP_004216 15 9605 NP_078945 15 9605 NP_569712 15 9605 NP_085059 15 9605 XP_006714754 15 9605 XP_005248656 15 9605 XP_005263224 15 9605 XP_006712096 15 9605 XP_005264430 15 9605 XP_006712094 15 9605 XP_006712093 15 9605 XP_005264429 15 9605 NP_060022 15 9605 NP_001229267 15 9605>NP_002430 Length = 1137 Score = 21.9 bits (45), Expect = 103 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DHNFMTASM 9 DHNFMTAS+ Sbjct: 277 DHNFMTASI 285>NP_001673 Length = 1220 Score = 16.2 bits (30), Expect = 5631 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 2 HNFMT 6 HNFMT Sbjct: 1142 HNFMT 1146>XP_005268976 Length = 1249 Score = 16.2 bits (30), Expect = 5631 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 2 HNFMT 6 HNFMT Sbjct: 1171 HNFMT 1175>NP_001159890 Length = 286 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 5/7 (71%) Query: 1 DHNFMTA 7 DH F TA Sbjct: 242 DHEFFTA 248>NP_060956 Length = 377 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 5/7 (71%) Query: 1 DHNFMTA 7 DH F TA Sbjct: 333 DHEFFTA 339>NP_002652 Length = 1265 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 DHNFMTAS 8 DH F+T+S Sbjct: 391 DHAFVTSS 398>NP_001136157 Length = 2087 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 HNFMTAS 8 H+F+TAS Sbjct: 1441 HSFVTAS 1447>NP_055530 Length = 1738 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 HNFMTAS 8 H+F+TAS Sbjct: 1092 HSFVTAS 1098>NP_001177984 Length = 535 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 HNFMTAS 8 HNF+T S Sbjct: 48 HNFITRS 54>XP_006724736 Length = 298 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 5/7 (71%) Query: 1 DHNFMTA 7 DH F TA Sbjct: 254 DHEFFTA 260>XP_006724735 Length = 389 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 5/7 (71%) Query: 1 DHNFMTA 7 DH F TA Sbjct: 345 DHEFFTA 351>XP_006719010 Length = 1436 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 HNFMTAS 8 H+F+TAS Sbjct: 790 HSFVTAS 796>XP_005271793 Length = 2061 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 HNFMTAS 8 H+F+TAS Sbjct: 1415 HSFVTAS 1421>XP_005249650 Length = 325 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 HNFMTAS 8 HNF+T++ Sbjct: 40 HNFLTSN 46>XP_005249649 Length = 448 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 HNFMTAS 8 HNF+T++ Sbjct: 163 HNFLTSN 169>NP_689686 Length = 477 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 HNFMTAS 8 HNF+T S Sbjct: 48 HNFITRS 54>NP_031368 Length = 423 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 HNFMTAS 8 HNF+T++ Sbjct: 163 HNFLTSN 169>NP_073585 Length = 1445 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 2 HNFMTAS 8 HNF+T + Sbjct: 1068 HNFLTVA 1074>NP_542415 Length = 2294 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 DHNFMT 6 DH+F+T Sbjct: 1978 DHSFLT 1983>NP_542416 Length = 2490 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 DHNFMT 6 DH+F+T Sbjct: 2174 DHSFLT 2179>NP_542414 Length = 2485 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 DHNFMT 6 DH+F+T Sbjct: 2169 DHSFLT 2174>NP_006255 Length = 2466 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 DHNFMT 6 DH+F+T Sbjct: 2150 DHSFLT 2155>NP_004216 Length = 1052 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 DHNFMTA 7 DHN +TA Sbjct: 189 DHNQLTA 195>NP_078945 Length = 614 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 HNFMTAS 8 +NF+TAS Sbjct: 444 NNFLTAS 450>NP_569712 Length = 1336 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 DHNFMTAS 8 +++FMTAS Sbjct: 1328 ENSFMTAS 1335>NP_085059 Length = 1516 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 DHNFMTAS 8 +++FMTAS Sbjct: 1508 ENSFMTAS 1515>XP_006714754 Length = 452 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 HNFMTAS 8 +NF+TAS Sbjct: 282 NNFLTAS 288>XP_005248656 Length = 491 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 HNFMTAS 8 +NF+TAS Sbjct: 321 NNFLTAS 327>XP_005263224 Length = 2491 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 DHNFMT 6 DH+F+T Sbjct: 2175 DHSFLT 2180>XP_006712096 Length = 802 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 2 HNFMTA 7 HN++TA Sbjct: 359 HNYLTA 364>XP_005264430 Length = 1044 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 2 HNFMTA 7 HN++TA Sbjct: 601 HNYLTA 606>XP_006712094 Length = 1067 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 2 HNFMTA 7 HN++TA Sbjct: 1029 HNYLTA 1034>XP_006712093 Length = 1460 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 2 HNFMTA 7 HN++TA Sbjct: 1029 HNYLTA 1034>XP_005264429 Length = 1472 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 2 HNFMTA 7 HN++TA Sbjct: 1029 HNYLTA 1034>NP_060022 Length = 1458 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 2 HNFMTA 7 HN++TA Sbjct: 1015 HNYLTA 1020>NP_001229267 Length = 1453 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 2 HNFMTA 7 HN++TA Sbjct: 1010 HNYLTA 1015Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.326 0.120 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 414,911 Number of extensions: 373 Number of successful extensions: 36 Number of sequences better than 10000.0: 36 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 36 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |