Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 21 229 NP_671714 21 229 XP_006715890 21 229 XP_005250160 21 229 XP_005250159 21 229 NP_004790 17 2528 NP_015563 17 2528 XP_006726591 17 3301 XP_006718462 17 3301 XP_006710008 17 3301 NP_064630 16 5631 XP_005267114 16 5631 NP_005264 16 7355 NP_056504 16 7355 XP_005250036 16 7355 XP_005250035 16 7355 XP_005250034 16 7355 XP_005250033 16 7355 NP_000932 15 9605 NP_115820 15 9605 NP_112190 15 9605 NP_031382 15 9605 XP_005250289 15 9605 XP_005263256 15 9605 NP_001103447 15 9605>NP_005742 Length = 3907 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DGVITQLTA 9 DG+ITQLTA Sbjct: 204 DGIITQLTA 212>NP_671714 Length = 3899 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DGVITQLTA 9 DG+ITQLTA Sbjct: 204 DGIITQLTA 212>XP_006715890 Length = 3860 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DGVITQLTA 9 DG+ITQLTA Sbjct: 204 DGIITQLTA 212>XP_005250160 Length = 3939 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DGVITQLTA 9 DG+ITQLTA Sbjct: 204 DGIITQLTA 212>XP_005250159 Length = 3952 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DGVITQLTA 9 DG+ITQLTA Sbjct: 204 DGIITQLTA 212>NP_004790 Length = 1425 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DGVITQLTA 9 DGV+ Q+TA Sbjct: 1224 DGVMVQITA 1232>NP_015563 Length = 1366 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DGVITQLTA 9 DGV+ Q+TA Sbjct: 1165 DGVMVQITA 1173>XP_006726591 Length = 352 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DGVITQLT 8 DGV+ QLT Sbjct: 77 DGVVIQLT 84>XP_006718462 Length = 4966 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DGVITQLT 8 DGV+ QLT Sbjct: 141 DGVVIQLT 148>XP_006710008 Length = 2014 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DGVITQLT 8 DGV+ QLT Sbjct: 141 DGVVIQLT 148>NP_064630 Length = 1543 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GVITQLTA 9 GV+TQL A Sbjct: 1021 GVVTQLPA 1028>XP_005267114 Length = 1543 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GVITQLTA 9 GV+TQL A Sbjct: 1021 GVVTQLPA 1028>NP_005264 Length = 340 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 DGVITQLTA 9 D +TQ+TA Sbjct: 27 DSTLTQITA 35>NP_056504 Length = 1009 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DGVITQLT 8 DGV TQ+T Sbjct: 86 DGVRTQVT 93>XP_005250036 Length = 742 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DGVITQLT 8 DGV TQ+T Sbjct: 86 DGVRTQVT 93>XP_005250035 Length = 1009 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DGVITQLT 8 DGV TQ+T Sbjct: 86 DGVRTQVT 93>XP_005250034 Length = 1009 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DGVITQLT 8 DGV TQ+T Sbjct: 86 DGVRTQVT 93>XP_005250033 Length = 1009 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DGVITQLT 8 DGV TQ+T Sbjct: 86 DGVRTQVT 93>NP_000932 Length = 680 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 DGVITQL 7 DG +TQL Sbjct: 588 DGALTQL 594>NP_115820 Length = 1834 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 DGVITQ 6 DGV+TQ Sbjct: 731 DGVLTQ 736>NP_112190 Length = 546 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 DGVITQLTA 9 DG QLTA Sbjct: 280 DGAAPQLTA 288>NP_031382 Length = 1761 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DGVITQLTA 9 + ITQLTA Sbjct: 1587 NSTITQLTA 1595>XP_005250289 Length = 1761 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 DGVITQLTA 9 + ITQLTA Sbjct: 1587 NSTITQLTA 1595>XP_005263256 Length = 1040 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GVITQLTA 9 G+ITQL + Sbjct: 877 GIITQLAS 884>NP_001103447 Length = 1040 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GVITQLTA 9 G+ITQL + Sbjct: 877 GIITQLAS 884Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.315 0.132 0.344 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 344,864 Number of extensions: 373 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |