Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 19 665 XP_006716142 19 665 XP_005250088 19 665 XP_006716141 19 665 XP_005250085 19 665 XP_006716140 19 665 XP_005250084 19 665 XP_005250083 19 665 XP_005250082 19 665 NP_003473 18 1482 XP_006719679 18 1482 XP_005269219 18 1482 XP_006719678 18 1482 XP_006719677 18 1482 NP_001159751 18 1935 NP_055686 18 1935 NP_001120932 18 1935 NP_000287 16 5631 NP_001009944 16 5631 NP_001230925 16 5631 NP_001027 16 5631 XP_005276550 16 5631 XP_005255427 16 5631 XP_006720956 16 5631 XP_006720955 16 5631 XP_006720954 16 5631 XP_006720953 16 5631 XP_006720952 16 5631 NP_001107859 16 7355 NP_872412 16 7355 XP_006714269 16 7355 NP_689497 16 7355>NP_733751 Length = 4911 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DDVRQIASI 9 D+VRQIASI Sbjct: 4530 DEVRQIASI 4538>XP_006716142 Length = 4927 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DDVRQIASI 9 D+VRQIASI Sbjct: 4546 DEVRQIASI 4554>XP_005250088 Length = 4928 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DDVRQIASI 9 D+VRQIASI Sbjct: 4547 DEVRQIASI 4555>XP_006716141 Length = 4959 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DDVRQIASI 9 D+VRQIASI Sbjct: 4578 DEVRQIASI 4586>XP_005250085 Length = 4979 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DDVRQIASI 9 D+VRQIASI Sbjct: 4602 DEVRQIASI 4610>XP_006716140 Length = 4982 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DDVRQIASI 9 D+VRQIASI Sbjct: 4601 DEVRQIASI 4609>XP_005250084 Length = 4982 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DDVRQIASI 9 D+VRQIASI Sbjct: 4601 DEVRQIASI 4609>XP_005250083 Length = 4982 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DDVRQIASI 9 D+VRQIASI Sbjct: 4601 DEVRQIASI 4609>XP_005250082 Length = 4983 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 DDVRQIASI 9 D+VRQIASI Sbjct: 4602 DEVRQIASI 4610>NP_003473 Length = 5537 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 DDVRQIASI 9 D+V+QIASI Sbjct: 5160 DEVKQIASI 5168>XP_006719679 Length = 5536 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 DDVRQIASI 9 D+V+QIASI Sbjct: 5159 DEVKQIASI 5167>XP_005269219 Length = 5537 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 DDVRQIASI 9 D+V+QIASI Sbjct: 5160 DEVKQIASI 5168>XP_006719678 Length = 5539 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 DDVRQIASI 9 D+V+QIASI Sbjct: 5162 DEVKQIASI 5170>XP_006719677 Length = 5540 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 DDVRQIASI 9 D+V+QIASI Sbjct: 5163 DEVKQIASI 5171>NP_001159751 Length = 1201 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DDVRQIASI 9 DD+RQI S+ Sbjct: 117 DDIRQIQSL 125>NP_055686 Length = 1198 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DDVRQIASI 9 DD+RQI S+ Sbjct: 117 DDIRQIQSL 125>NP_001120932 Length = 1202 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DDVRQIASI 9 DD+RQI S+ Sbjct: 117 DDIRQIQSL 125>NP_000287 Length = 4302 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 DDVRQIAS 8 DD++QIA+ Sbjct: 2659 DDIQQIAA 2666>NP_001009944 Length = 4303 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 DDVRQIAS 8 DD++QIA+ Sbjct: 2659 DDIQQIAA 2666>NP_001230925 Length = 4865 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 DDVRQI 6 DDVRQI Sbjct: 1741 DDVRQI 1746>NP_001027 Length = 4870 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 DDVRQI 6 DDVRQI Sbjct: 1741 DDVRQI 1746>XP_005276550 Length = 314 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 DDVRQIAS 8 DD++QIA+ Sbjct: 164 DDIQQIAA 171>XP_005255427 Length = 3288 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 DDVRQIAS 8 DD++QIA+ Sbjct: 1644 DDIQQIAA 1651>XP_006720956 Length = 3895 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 DDVRQIAS 8 DD++QIA+ Sbjct: 2251 DDIQQIAA 2258>XP_006720955 Length = 4279 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 DDVRQIAS 8 DD++QIA+ Sbjct: 2635 DDIQQIAA 2642>XP_006720954 Length = 4334 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 DDVRQIAS 8 DD++QIA+ Sbjct: 2696 DDIQQIAA 2703>XP_006720953 Length = 4339 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 DDVRQIAS 8 DD++QIA+ Sbjct: 2696 DDIQQIAA 2703>XP_006720952 Length = 4340 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 DDVRQIAS 8 DD++QIA+ Sbjct: 2696 DDIQQIAA 2703>NP_001107859 Length = 418 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 DDVRQI 6 DD+RQI Sbjct: 286 DDIRQI 291>NP_872412 Length = 421 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 DDVRQI 6 DD+RQI Sbjct: 289 DDIRQI 294>XP_006714269 Length = 387 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 DDVRQI 6 DD+RQI Sbjct: 255 DDIRQI 260>NP_689497 Length = 233 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 DDVRQIAS 8 DD++Q+A+ Sbjct: 223 DDIKQLAA 230Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.322 0.137 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 340,588 Number of extensions: 426 Number of successful extensions: 32 Number of sequences better than 10000.0: 32 Number of HSP's gapped: 32 Number of HSP's successfully gapped: 32 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |