Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_444256 20 509 NP_444254 20 509 NP_444253 20 509 NP_444255 20 509 XP_005247551 20 509 XP_005247550 20 509 XP_006713712 20 509 XP_005247549 20 509 NP_001238981 17 3301 NP_001238978 17 3301 NP_001238979 17 3301 NP_001238980 17 3301 NP_001238982 17 3301 NP_005380 17 3301 NP_065744 16 5631 NP_004490 16 5631 NP_112556 16 5631 NP_079321 16 7355 NP_001257475 16 7355 NP_061330 16 7355 NP_443122 16 7355 NP_619636 16 7355 XP_005261808 16 7355 XP_005254913 16 7355 NP_733751 15 9605 NP_001071107 15 9605 NP_060148 15 9605 XP_006716142 15 9605 XP_005250088 15 9605 XP_006716141 15 9605 XP_005250085 15 9605 XP_006716140 15 9605 XP_005250084 15 9605 XP_005250083 15 9605 XP_005250082 15 9605 NP_997204 15 9605>NP_444256 Length = 1794 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DATVKMKPA 9 DATVK KPA Sbjct: 1150 DATVKKKPA 1158>NP_444254 Length = 1845 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DATVKMKPA 9 DATVK KPA Sbjct: 1150 DATVKKKPA 1158>NP_444253 Length = 1914 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DATVKMKPA 9 DATVK KPA Sbjct: 1219 DATVKKKPA 1227>NP_444255 Length = 1863 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DATVKMKPA 9 DATVK KPA Sbjct: 1219 DATVKKKPA 1227>XP_005247551 Length = 1855 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DATVKMKPA 9 DATVK KPA Sbjct: 1160 DATVKKKPA 1168>XP_005247550 Length = 1856 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DATVKMKPA 9 DATVK KPA Sbjct: 1229 DATVKKKPA 1237>XP_006713712 Length = 1923 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DATVKMKPA 9 DATVK KPA Sbjct: 1229 DATVKKKPA 1237>XP_005247549 Length = 1924 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DATVKMKPA 9 DATVK KPA Sbjct: 1229 DATVKKKPA 1237>NP_001238981 Length = 251 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 DATVKMKP 8 D ++KMKP Sbjct: 223 DGSIKMKP 230>NP_001238978 Length = 286 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 DATVKMKP 8 D ++KMKP Sbjct: 258 DGSIKMKP 265>NP_001238979 Length = 250 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 DATVKMKP 8 D ++KMKP Sbjct: 223 DGSIKMKP 230>NP_001238980 Length = 250 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 DATVKMKP 8 D ++KMKP Sbjct: 223 DGSIKMKP 230>NP_001238982 Length = 285 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 DATVKMKP 8 D ++KMKP Sbjct: 258 DGSIKMKP 265>NP_005380 Length = 285 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 DATVKMKP 8 D ++KMKP Sbjct: 258 DGSIKMKP 265>NP_065744 Length = 2113 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 ATVKMKPA 9 +T+K+KPA Sbjct: 910 STLKLKPA 917>NP_004490 Length = 285 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 DATVKMKP 8 D T+KM P Sbjct: 98 DCTIKMDP 105>NP_112556 Length = 332 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 DATVKMKP 8 D T+KM P Sbjct: 98 DCTIKMDP 105>NP_079321 Length = 529 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 ATVKMKP 8 ATVK++P Sbjct: 511 ATVKLRP 517>NP_001257475 Length = 1434 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 ATVKMKP 8 A VKMKP Sbjct: 461 AKVKMKP 467>NP_061330 Length = 511 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 ATVKMKP 8 ATVK++P Sbjct: 493 ATVKLRP 499>NP_443122 Length = 576 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ATVKMKPA 9 ATVK +PA Sbjct: 547 ATVKPRPA 554>NP_619636 Length = 760 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 ATVKMKP 8 ATVK KP Sbjct: 104 ATVKCKP 110>XP_005261808 Length = 529 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 ATVKMKP 8 ATVK++P Sbjct: 511 ATVKLRP 517>XP_005254913 Length = 1441 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 ATVKMKP 8 A VKMKP Sbjct: 461 AKVKMKP 467>NP_733751 Length = 4911 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TVKMKP 8 TVK+KP Sbjct: 4328 TVKLKP 4333>NP_001071107 Length = 544 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 ATVKMK 7 ATVKMK Sbjct: 333 ATVKMK 338>NP_060148 Length = 260 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 ATVKMK 7 ATVKMK Sbjct: 49 ATVKMK 54>XP_006716142 Length = 4927 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TVKMKP 8 TVK+KP Sbjct: 4344 TVKLKP 4349>XP_005250088 Length = 4928 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TVKMKP 8 TVK+KP Sbjct: 4345 TVKLKP 4350>XP_006716141 Length = 4959 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TVKMKP 8 TVK+KP Sbjct: 4376 TVKLKP 4381>XP_005250085 Length = 4979 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TVKMKP 8 TVK+KP Sbjct: 4400 TVKLKP 4405>XP_006716140 Length = 4982 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TVKMKP 8 TVK+KP Sbjct: 4399 TVKLKP 4404>XP_005250084 Length = 4982 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TVKMKP 8 TVK+KP Sbjct: 4399 TVKLKP 4404>XP_005250083 Length = 4982 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TVKMKP 8 TVK+KP Sbjct: 4399 TVKLKP 4404>XP_005250082 Length = 4983 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TVKMKP 8 TVK+KP Sbjct: 4400 TVKLKP 4405>NP_997204 Length = 480 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 TVKMKPA 9 T+K+KP+ Sbjct: 382 TIKLKPS 388Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.308 0.117 0.314 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 548,072 Number of extensions: 802 Number of successful extensions: 36 Number of sequences better than 10000.0: 36 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 36 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |