Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115927 18 1135 XP_006715292 18 1135 NP_001957 16 5631 NP_001159887 16 5631 NP_003250 16 5631 XP_006721993 16 5631 XP_006713588 16 5631 NP_057085 16 5631 NP_004045 16 7355 XP_005259159 16 7355 NP_065913 16 7355 NP_683692 15 9605 NP_056381 15 9605 XP_005248537 15 9605 XP_005248536 15 9605 XP_005248208 15 9605 XP_005248207 15 9605 XP_006714021 15 9605>NP_115927 Length = 1321 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DAFLSTSTS 9 DA LSTSTS Sbjct: 316 DALLSTSTS 324>XP_006715292 Length = 759 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DAFLSTSTS 9 DA LSTSTS Sbjct: 303 DALLSTSTS 311>NP_001957 Length = 723 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DAFLSTSTS 9 +AFL T+TS Sbjct: 403 EAFLCTNTS 411>NP_001159887 Length = 627 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DAFLSTSTS 9 +AFL T+TS Sbjct: 307 EAFLCTNTS 315>NP_003250 Length = 924 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 DAFLSTSTS 9 DAF++T+T+ Sbjct: 280 DAFVATATA 288>XP_006721993 Length = 551 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 FLSTSTS 9 F+STSTS Sbjct: 241 FISTSTS 247>XP_006713588 Length = 515 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DAFLSTSTS 9 +AFL T+TS Sbjct: 195 EAFLCTNTS 203>NP_057085 Length = 556 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 FLSTSTS 9 F+STSTS Sbjct: 224 FISTSTS 230>NP_004045 Length = 482 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 DAFLST 6 DAFLST Sbjct: 287 DAFLST 292>XP_005259159 Length = 771 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 DAFLST 6 DAFLST Sbjct: 158 DAFLST 163>NP_065913 Length = 771 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 DAFLST 6 DAFLST Sbjct: 158 DAFLST 163>NP_683692 Length = 3051 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AFLSTSTS 9 A +STSTS Sbjct: 2291 AMISTSTS 2298>NP_056381 Length = 670 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 DAFLSTS 7 DAF STS Sbjct: 310 DAFASTS 316>XP_005248537 Length = 670 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 DAFLSTS 7 DAF STS Sbjct: 310 DAFASTS 316>XP_005248536 Length = 732 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 DAFLSTS 7 DAF STS Sbjct: 372 DAFASTS 378>XP_005248208 Length = 3097 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AFLSTSTS 9 A +STSTS Sbjct: 2291 AMISTSTS 2298>XP_005248207 Length = 3098 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AFLSTSTS 9 A +STSTS Sbjct: 2291 AMISTSTS 2298>XP_006714021 Length = 3112 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AFLSTSTS 9 A +STSTS Sbjct: 2291 AMISTSTS 2298Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.301 0.107 0.256 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 323,012 Number of extensions: 289 Number of successful extensions: 18 Number of sequences better than 10000.0: 18 Number of HSP's gapped: 18 Number of HSP's successfully gapped: 18 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |