Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000258 20 509 NP_001035957 20 509 XP_006721991 20 509 XP_006721990 20 509 XP_006721989 20 509 XP_005258041 20 509 XP_006721988 20 509 XP_006721987 20 509 XP_006721986 20 509 XP_005258040 20 509 XP_006721985 20 509 NP_998814 17 4312 XP_005269584 17 4312 XP_005269583 17 4312 XP_006717688 17 4312 XP_005269582 17 4312 NP_001124146 16 7355 NP_001210 16 7355 NP_001186602 16 7355 NP_001186601 16 7355 NP_001186600 16 7355 XP_006716114 16 7355 NP_001008405 16 7355 NP_001558 15 9605 XP_006718600 15 9605 XP_006718599 15 9605 XP_006718598 15 9605 XP_006718597 15 9605 XP_005274036 15 9605 XP_005274035 15 9605>NP_000258 Length = 2818 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 CTVLAMSKL 9 CTVLAMS L Sbjct: 1144 CTVLAMSNL 1152>NP_001035957 Length = 2839 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 CTVLAMSKL 9 CTVLAMS L Sbjct: 1144 CTVLAMSNL 1152>XP_006721991 Length = 1632 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 CTVLAMSKL 9 CTVLAMS L Sbjct: 1154 CTVLAMSNL 1162>XP_006721990 Length = 2823 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 CTVLAMSKL 9 CTVLAMS L Sbjct: 1154 CTVLAMSNL 1162>XP_006721989 Length = 2823 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 CTVLAMSKL 9 CTVLAMS L Sbjct: 1154 CTVLAMSNL 1162>XP_005258041 Length = 2836 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 CTVLAMSKL 9 CTVLAMS L Sbjct: 1144 CTVLAMSNL 1152>XP_006721988 Length = 2846 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 CTVLAMSKL 9 CTVLAMS L Sbjct: 1154 CTVLAMSNL 1162>XP_006721987 Length = 2849 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 CTVLAMSKL 9 CTVLAMS L Sbjct: 1154 CTVLAMSNL 1162>XP_006721986 Length = 2854 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 CTVLAMSKL 9 CTVLAMS L Sbjct: 1141 CTVLAMSNL 1149>XP_005258040 Length = 2857 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 CTVLAMSKL 9 CTVLAMS L Sbjct: 1144 CTVLAMSNL 1152>XP_006721985 Length = 2867 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 CTVLAMSKL 9 CTVLAMS L Sbjct: 1154 CTVLAMSNL 1162>NP_998814 Length = 337 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 CTVLAM 6 CTVLAM Sbjct: 291 CTVLAM 296>XP_005269584 Length = 221 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 CTVLAM 6 CTVLAM Sbjct: 175 CTVLAM 180>XP_005269583 Length = 221 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 CTVLAM 6 CTVLAM Sbjct: 175 CTVLAM 180>XP_006717688 Length = 314 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 CTVLAM 6 CTVLAM Sbjct: 291 CTVLAM 296>XP_005269582 Length = 328 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 CTVLAM 6 CTVLAM Sbjct: 282 CTVLAM 287>NP_001124146 Length = 315 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 CTVLAMSK 8 CT A+SK Sbjct: 13 CTAFALSK 20>NP_001210 Length = 315 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 CTVLAMSK 8 CT A+SK Sbjct: 13 CTAFALSK 20>NP_001186602 Length = 224 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 CTVLAMSK 8 CT A+SK Sbjct: 13 CTAFALSK 20>NP_001186601 Length = 323 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 CTVLAMSK 8 CT A+SK Sbjct: 21 CTAFALSK 28>NP_001186600 Length = 323 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 CTVLAMSK 8 CT A+SK Sbjct: 21 CTAFALSK 28>XP_006716114 Length = 348 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 CTVLAMSK 8 C V+A+SK Sbjct: 312 CIVMALSK 319>NP_001008405 Length = 348 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 CTVLAMSK 8 C V+A+SK Sbjct: 312 CIVMALSK 319>NP_001558 Length = 1258 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 CTVLAMSK 8 C+VL M+K Sbjct: 1121 CSVLQMAK 1128>XP_006718600 Length = 1159 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 CTVLAMSK 8 C+VL M+K Sbjct: 1022 CSVLQMAK 1029>XP_006718599 Length = 1159 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 CTVLAMSK 8 C+VL M+K Sbjct: 1022 CSVLQMAK 1029>XP_006718598 Length = 1206 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 CTVLAMSK 8 C+VL M+K Sbjct: 1143 CSVLQMAK 1150>XP_006718597 Length = 1258 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 CTVLAMSK 8 C+VL M+K Sbjct: 1121 CSVLQMAK 1128>XP_005274036 Length = 1280 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 CTVLAMSK 8 C+VL M+K Sbjct: 1143 CSVLQMAK 1150>XP_005274035 Length = 1280 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 CTVLAMSK 8 C+VL M+K Sbjct: 1143 CSVLQMAK 1150Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.333 0.128 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 295,533 Number of extensions: 322 Number of successful extensions: 30 Number of sequences better than 10000.0: 30 Number of HSP's gapped: 30 Number of HSP's successfully gapped: 30 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |