Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001268421 20 299 NP_000170 20 299 NP_001268422 20 299 NP_001268423 20 299 XP_005264328 20 299 NP_734465 17 2528 NP_001231818 17 2528 XP_006717416 17 2528 NP_000278 17 3301 NP_612353 17 3301 NP_001194003 17 3301 NP_001194001 17 3301 NP_001194002 17 3301 XP_005249237 17 3301 NP_001194000 17 3301 NP_000341 17 4312 NP_055365 17 4312 NP_001034678 17 4312 NP_001375 17 4312 XP_005270616 17 4312 NP_079133 16 7355 NP_116245 16 7355 XP_006720787 16 7355 NP_001122108 15 9605 NP_057222 15 9605 NP_001177912 15 9605 NP_005112 15 9605 XP_005255090 15 9605 XP_006715792 15 9605 XP_006715791 15 9605 XP_006715790 15 9605 XP_006715789 15 9605 XP_006715788 15 9605>NP_001268421 Length = 1230 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 CRPVILLSE 9 CRPVILL E Sbjct: 945 CRPVILLPE 953>NP_000170 Length = 1360 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 CRPVILLSE 9 CRPVILL E Sbjct: 1075 CRPVILLPE 1083>NP_001268422 Length = 1058 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 CRPVILLSE 9 CRPVILL E Sbjct: 773 CRPVILLPE 781>NP_001268423 Length = 1058 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 CRPVILLSE 9 CRPVILL E Sbjct: 773 CRPVILLPE 781>XP_005264328 Length = 1261 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 CRPVILLSE 9 CRPVILL E Sbjct: 976 CRPVILLPE 984>NP_734465 Length = 945 Score = 17.3 bits (33), Expect = 2528 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 CRPVIL 6 CRPVIL Sbjct: 615 CRPVIL 620>NP_001231818 Length = 934 Score = 17.3 bits (33), Expect = 2528 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 CRPVIL 6 CRPVIL Sbjct: 604 CRPVIL 609>XP_006717416 Length = 624 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 CRPVILLS 8 CRPV+L S Sbjct: 503 CRPVVLHS 510>NP_000278 Length = 980 Score = 16.9 bits (32), Expect = 3301 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 CRPVILL 7 CRP +LL Sbjct: 521 CRPAVLL 527>NP_612353 Length = 354 Score = 16.9 bits (32), Expect = 3301 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 CRPVIL 6 CRPV+L Sbjct: 329 CRPVVL 334>NP_001194003 Length = 292 Score = 16.9 bits (32), Expect = 3301 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 CRPVIL 6 CRPV+L Sbjct: 267 CRPVVL 272>NP_001194001 Length = 292 Score = 16.9 bits (32), Expect = 3301 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 CRPVIL 6 CRPV+L Sbjct: 267 CRPVVL 272>NP_001194002 Length = 292 Score = 16.9 bits (32), Expect = 3301 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 CRPVIL 6 CRPV+L Sbjct: 267 CRPVVL 272>XP_005249237 Length = 892 Score = 16.9 bits (32), Expect = 3301 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 CRPVILL 7 CRP +LL Sbjct: 433 CRPAVLL 439>NP_001194000 Length = 292 Score = 16.9 bits (32), Expect = 3301 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 CRPVIL 6 CRPV+L Sbjct: 267 CRPVVL 272>NP_000341 Length = 2273 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 CRPVILLSE 9 C P++LL E Sbjct: 2088 CPPLVLLDE 2096>NP_055365 Length = 1032 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RPVILLSE 9 RPV+LL E Sbjct: 846 RPVVLLPE 853>NP_001034678 Length = 261 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 PVILLSE 9 PV+LLSE Sbjct: 148 PVVLLSE 154>NP_001375 Length = 489 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 PVILLSE 9 PV+LLSE Sbjct: 148 PVVLLSE 154>XP_005270616 Length = 413 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 PVILLSE 9 PV+LLSE Sbjct: 72 PVVLLSE 78>NP_079133 Length = 1844 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 CRPVILLSE 9 CR V+ LSE Sbjct: 210 CRDVVDLSE 218>NP_116245 Length = 378 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 CRPVILLS 8 CRP LLS Sbjct: 352 CRPRTLLS 359>XP_006720787 Length = 256 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 CRPVILLS 8 CRP LLS Sbjct: 230 CRPRTLLS 237>NP_001122108 Length = 828 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 PVILLSE 9 P++LLSE Sbjct: 597 PLVLLSE 603>NP_057222 Length = 217 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 CRPVILLSE 9 CR I LSE Sbjct: 207 CRVAIYLSE 215>NP_001177912 Length = 179 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 CRPVILLSE 9 CR I LSE Sbjct: 169 CRVAIYLSE 177>NP_005112 Length = 2174 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RPVILLSE 9 +PV LLSE Sbjct: 184 QPVYLLSE 191>XP_005255090 Length = 203 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 CRPVILLSE 9 CR I LSE Sbjct: 193 CRVAIYLSE 201>XP_006715792 Length = 828 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 PVILLSE 9 P++LLSE Sbjct: 597 PLVLLSE 603>XP_006715791 Length = 828 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 PVILLSE 9 P++LLSE Sbjct: 597 PLVLLSE 603>XP_006715790 Length = 828 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 PVILLSE 9 P++LLSE Sbjct: 597 PLVLLSE 603>XP_006715789 Length = 828 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 PVILLSE 9 P++LLSE Sbjct: 597 PLVLLSE 603>XP_006715788 Length = 828 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 PVILLSE 9 P++LLSE Sbjct: 597 PLVLLSE 603Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.332 0.148 0.470 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 541,495 Number of extensions: 802 Number of successful extensions: 33 Number of sequences better than 10000.0: 33 Number of HSP's gapped: 33 Number of HSP's successfully gapped: 33 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |