Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006209 20 299 XP_006713721 20 299 NP_056161 17 3301 XP_006720156 17 3301 XP_006712935 16 5631 XP_006712934 16 5631 XP_006712933 16 5631 NP_852118 16 5631 NP_001026 16 7355 NP_064551 16 7355 NP_001159687 16 7355 NP_110387 16 7355 XP_005259994 16 7355 XP_006711873 16 7355 XP_006711871 16 7355 XP_006711870 16 7355 XP_006711869 16 7355 XP_006711868 16 7355 XP_006711867 16 7355 XP_006711866 16 7355 XP_006711865 16 7355 NP_000408 15 9605 NP_066919 15 9605 NP_001003406 15 9605 XP_005252503 15 9605 NP_004465 15 9605>NP_006209 Length = 1068 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 CQIMSSAKR 9 C+IMSSAKR Sbjct: 769 CRIMSSAKR 777>XP_006713721 Length = 1068 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 CQIMSSAKR 9 C+IMSSAKR Sbjct: 769 CRIMSSAKR 777>NP_056161 Length = 2539 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 CQIMSSAKR 9 CQ + SAKR Sbjct: 377 CQSLESAKR 385>XP_006720156 Length = 2497 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 CQIMSSAKR 9 CQ + SAKR Sbjct: 377 CQSLESAKR 385>XP_006712935 Length = 977 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 CQIMSSAK 8 CQI +SAK Sbjct: 260 CQIEASAK 267>XP_006712934 Length = 1583 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 CQIMSSAK 8 CQI +SAK Sbjct: 156 CQIEASAK 163>XP_006712933 Length = 1687 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 CQIMSSAK 8 CQI +SAK Sbjct: 260 CQIEASAK 267>NP_852118 Length = 1684 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 CQIMSSAK 8 CQI +SAK Sbjct: 257 CQIEASAK 264>NP_001026 Length = 4967 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 QIMSSAKR 9 +IM SAKR Sbjct: 4137 EIMGSAKR 4144>NP_064551 Length = 725 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 CQIMSSAKR 9 C++M +AK+ Sbjct: 62 CRVMRTAKK 70>NP_001159687 Length = 398 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 CQIMSSAKR 9 CQ+ ++A+R Sbjct: 217 CQVRANARR 225>NP_110387 Length = 398 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 CQIMSSAKR 9 CQ+ ++A+R Sbjct: 217 CQVRANARR 225>XP_005259994 Length = 500 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 CQIMSSAKR 9 CQ+ ++A+R Sbjct: 319 CQVRANARR 327>XP_006711873 Length = 4954 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 QIMSSAKR 9 +IM SAKR Sbjct: 4124 EIMGSAKR 4131>XP_006711871 Length = 4906 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 QIMSSAKR 9 +IM SAKR Sbjct: 4076 EIMGSAKR 4083>XP_006711870 Length = 4965 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 QIMSSAKR 9 +IM SAKR Sbjct: 4135 EIMGSAKR 4142>XP_006711869 Length = 4973 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 QIMSSAKR 9 +IM SAKR Sbjct: 4143 EIMGSAKR 4150>XP_006711868 Length = 4975 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 QIMSSAKR 9 +IM SAKR Sbjct: 4145 EIMGSAKR 4152>XP_006711867 Length = 4977 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 QIMSSAKR 9 +IM SAKR Sbjct: 4147 EIMGSAKR 4154>XP_006711866 Length = 4984 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 QIMSSAKR 9 +IM SAKR Sbjct: 4154 EIMGSAKR 4161>XP_006711865 Length = 4985 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 QIMSSAKR 9 +IM SAKR Sbjct: 4155 EIMGSAKR 4162>NP_000408 Length = 272 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 CQIMSSAKR 9 CQ SSA R Sbjct: 80 CQCTSSATR 88>NP_066919 Length = 2223 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 CQIMSSAKR 9 C I+ AKR Sbjct: 443 CHILRKAKR 451>NP_001003406 Length = 2188 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 CQIMSSAKR 9 C I+ AKR Sbjct: 443 CHILRKAKR 451>XP_005252503 Length = 200 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 CQIMSSAKR 9 CQ SSA R Sbjct: 80 CQCTSSATR 88>NP_004465 Length = 495 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 CQIMSS 6 C+IMSS Sbjct: 8 CEIMSS 13Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.327 0.118 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 288,539 Number of extensions: 227 Number of successful extensions: 26 Number of sequences better than 10000.0: 26 Number of HSP's gapped: 26 Number of HSP's successfully gapped: 26 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |