Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_054831 19 869 NP_001269832 19 869 NP_001269831 19 869 XP_005251106 19 869 XP_006716688 19 869 XP_006716687 19 869 NP_005535 17 3301 XP_006712575 17 3301 XP_005246591 17 3301 NP_689772 16 5631 NP_076435 16 7355 NP_000368 15 9605 NP_542158 15 9605 NP_001258297 15 9605 NP_000953 15 9605 NP_002970 15 9605 NP_001258094 15 9605 NP_001258296 15 9605 NP_001258093 15 9605 NP_001258095 15 9605 NP_001028732 15 9605 NP_057070 15 9605 NP_803430 15 9605 NP_803429 15 9605 NP_803252 15 9605 NP_006036 15 9605 NP_078928 15 9605 NP_001180528 15 9605 NP_001180546 15 9605 NP_570722 15 9605 NP_001028731 15 9605 XP_006722071 15 9605 XP_006722004 15 9605 XP_006717255 15 9605 XP_005252162 15 9605 XP_005271161 15 9605 XP_005271160 15 9605>NP_054831 Length = 1294 Score = 18.9 bits (37), Expect = 869 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 CLTTKTAIF 9 CLTTKT+++ Sbjct: 912 CLTTKTSLW 920>NP_001269832 Length = 1287 Score = 18.9 bits (37), Expect = 869 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 CLTTKTAIF 9 CLTTKT+++ Sbjct: 905 CLTTKTSLW 913>NP_001269831 Length = 1285 Score = 18.9 bits (37), Expect = 869 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 CLTTKTAIF 9 CLTTKT+++ Sbjct: 903 CLTTKTSLW 911>XP_005251106 Length = 1281 Score = 18.9 bits (37), Expect = 869 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 CLTTKTAIF 9 CLTTKT+++ Sbjct: 899 CLTTKTSLW 907>XP_006716688 Length = 1294 Score = 18.9 bits (37), Expect = 869 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 CLTTKTAIF 9 CLTTKT+++ Sbjct: 912 CLTTKTSLW 920>XP_006716687 Length = 1294 Score = 18.9 bits (37), Expect = 869 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 CLTTKTAIF 9 CLTTKT+++ Sbjct: 912 CLTTKTSLW 920>NP_005535 Length = 1242 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 CLTTKTAIF 9 CLT+KT F Sbjct: 186 CLTSKTISF 194>XP_006712575 Length = 1242 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 CLTTKTAIF 9 CLT+KT F Sbjct: 186 CLTSKTISF 194>XP_005246591 Length = 1242 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 CLTTKTAIF 9 CLT+KT F Sbjct: 186 CLTSKTISF 194>NP_689772 Length = 245 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 CLTTKT 6 CLTT+T Sbjct: 164 CLTTRT 169>NP_076435 Length = 131 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 CLTTKTA 7 C+TT+T+ Sbjct: 46 CMTTRTS 52>NP_000368 Length = 502 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 CLTTKTAI 8 CLT TA+ Sbjct: 43 CLTLATAV 50>NP_542158 Length = 562 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 1 CLTTKT 6 CL TKT Sbjct: 531 CLNTKT 536>NP_001258297 Length = 537 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 1 CLTTKT 6 CL TKT Sbjct: 506 CLNTKT 511>NP_000953 Length = 599 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 1 CLTTKT 6 CL TKT Sbjct: 568 CLNTKT 573>NP_002970 Length = 547 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 CLTTKTAIF 9 C T TA+F Sbjct: 94 CATGSTALF 102>NP_001258094 Length = 490 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 1 CLTTKT 6 CL TKT Sbjct: 459 CLNTKT 464>NP_001258296 Length = 453 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 1 CLTTKT 6 CL TKT Sbjct: 422 CLNTKT 427>NP_001258093 Length = 551 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 1 CLTTKT 6 CL TKT Sbjct: 520 CLNTKT 525>NP_001258095 Length = 453 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 1 CLTTKT 6 CL TKT Sbjct: 422 CLNTKT 427>NP_001028732 Length = 381 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 TKTAIF 9 TKTA+F Sbjct: 13 TKTAVF 18>NP_057070 Length = 442 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 CLTTKTAIF 9 C++T A+F Sbjct: 353 CISTNGAVF 361>NP_803430 Length = 116 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 CLTTKT 6 C+TT+T Sbjct: 46 CMTTRT 51>NP_803429 Length = 116 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 CLTTKT 6 C+TT+T Sbjct: 46 CMTTRT 51>NP_803252 Length = 116 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 CLTTKT 6 C+TT+T Sbjct: 46 CMTTRT 51>NP_006036 Length = 1047 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 CLTTKTAIF 9 C++T A+F Sbjct: 852 CISTMQAVF 860>NP_078928 Length = 2015 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 CLTTKTAIF 9 CL K A+F Sbjct: 439 CLPDKMAVF 447>NP_001180528 Length = 523 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 CLTTKTAIF 9 C T TA+F Sbjct: 70 CATGSTALF 78>NP_001180546 Length = 466 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 CLTTKTAIF 9 C T TA+F Sbjct: 13 CATGSTALF 21>NP_570722 Length = 420 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 TKTAIF 9 TKTA+F Sbjct: 13 TKTAVF 18>NP_001028731 Length = 376 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 TKTAIF 9 TKTA+F Sbjct: 13 TKTAVF 18>XP_006722071 Length = 491 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 CLTTKTAI 8 C TT TA+ Sbjct: 23 CATTTTAL 30>XP_006722004 Length = 400 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 CLTTKTAIF 9 C++T A+F Sbjct: 311 CISTNGAVF 319>XP_006717255 Length = 537 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 1 CLTTKT 6 CL TKT Sbjct: 506 CLNTKT 511>XP_005252162 Length = 574 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 1 CLTTKT 6 CL TKT Sbjct: 543 CLNTKT 548>XP_005271161 Length = 366 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 CLTTKTAIF 9 C T TA+F Sbjct: 94 CATGSTALF 102>XP_005271160 Length = 463 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 CLTTKTAIF 9 C T TA+F Sbjct: 94 CATGSTALF 102Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.337 0.135 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 379,005 Number of extensions: 599 Number of successful extensions: 37 Number of sequences better than 10000.0: 37 Number of HSP's gapped: 37 Number of HSP's successfully gapped: 37 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |