Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001274741 18 1482 NP_071765 17 4312 NP_853517 17 4312 XP_006721927 17 4312 XP_005257364 17 4312 NP_057675 16 5631 NP_115992 16 5631 NP_001276093 16 5631 NP_001276094 16 5631 NP_998768 16 5631 XP_005250338 16 5631 NP_001032242 16 7355 NP_001229813 16 7355 NP_056369 16 7355 NP_001274533 16 7355 NP_001274532 16 7355 NP_542782 16 7355 NP_003434 16 7355 XP_005261690 16 7355 XP_005254355 16 7355 XP_005246044 16 7355 XP_005246043 16 7355 NP_005484 15 9605 NP_060290 15 9605 XP_006720925 15 9605 XP_006720924 15 9605 XP_006720923 15 9605 XP_005255218 15 9605 XP_005255217 15 9605 XP_006717224 15 9605 XP_006717223 15 9605 XP_006717222 15 9605 XP_006717221 15 9605 XP_006717220 15 9605 XP_006717219 15 9605 XP_006717218 15 9605 XP_006717217 15 9605 XP_006717216 15 9605 XP_006717215 15 9605 XP_006717214 15 9605 XP_006715992 15 9605 XP_006715008 15 9605>NP_001274741 Length = 131 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 CLGSEARS 8 CLGS ARS Sbjct: 48 CLGSAARS 55>NP_071765 Length = 1386 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 CLGSEAR 7 CLG+E+R Sbjct: 810 CLGNESR 816>NP_853517 Length = 468 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 CLGSEARS 8 C+GS ARS Sbjct: 34 CVGSGARS 41>XP_006721927 Length = 465 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 CLGSEARS 8 C+GS ARS Sbjct: 34 CVGSGARS 41>XP_005257364 Length = 466 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 CLGSEARS 8 C+GS ARS Sbjct: 34 CVGSGARS 41>NP_057675 Length = 453 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 CLGSEARSV 9 C GS RSV Sbjct: 382 CTGSHLRSV 390>NP_115992 Length = 753 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 CLGSEARS 8 CL S ARS Sbjct: 560 CLASSARS 567>NP_001276093 Length = 608 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 CLGSEARS 8 CL S ARS Sbjct: 415 CLASSARS 422>NP_001276094 Length = 392 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 CLGSEARS 8 CL S ARS Sbjct: 199 CLASSARS 206>NP_998768 Length = 425 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 CLGSEAR 7 C GSEAR Sbjct: 87 CPGSEAR 93>XP_005250338 Length = 418 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 CLGSEAR 7 C GSEAR Sbjct: 80 CPGSEAR 86>NP_001032242 Length = 733 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LGSEARSV 9 LGSEAR + Sbjct: 560 LGSEARGL 567>NP_001229813 Length = 721 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LGSEARSV 9 LGSEAR + Sbjct: 198 LGSEARGL 205>NP_056369 Length = 617 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LGSEARSV 9 LG EARS+ Sbjct: 530 LGKEARSL 537>NP_001274533 Length = 727 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LGSEARSV 9 LGSEAR + Sbjct: 204 LGSEARGL 211>NP_001274532 Length = 810 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LGSEARSV 9 LGSEAR + Sbjct: 280 LGSEARGL 287>NP_542782 Length = 575 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 CLGSEAR 7 C G+EAR Sbjct: 413 CAGTEAR 419>NP_003434 Length = 803 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LGSEARSV 9 LGSEAR + Sbjct: 280 LGSEARGL 287>XP_005261690 Length = 316 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 GSEARSV 9 GSEARS+ Sbjct: 13 GSEARSL 19>XP_005254355 Length = 617 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LGSEARSV 9 LG EARS+ Sbjct: 530 LGKEARSL 537>XP_005246044 Length = 734 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LGSEARSV 9 LGSEAR + Sbjct: 204 LGSEARGL 211>XP_005246043 Length = 747 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LGSEARSV 9 LGSEAR + Sbjct: 217 LGSEARGL 224>NP_005484 Length = 729 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 CLGSEARS 8 CLG ARS Sbjct: 707 CLGLMARS 714>NP_060290 Length = 876 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 CLGSEAR 7 CLG +AR Sbjct: 647 CLGVDAR 653>XP_006720925 Length = 1674 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 CLGSEARS 8 C GS ARS Sbjct: 1377 CKGSGARS 1384>XP_006720924 Length = 1679 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 CLGSEARS 8 C GS ARS Sbjct: 1305 CKGSGARS 1312>XP_006720923 Length = 1738 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 CLGSEARS 8 C GS ARS Sbjct: 1364 CKGSGARS 1371>XP_005255218 Length = 1750 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 CLGSEARS 8 C GS ARS Sbjct: 1376 CKGSGARS 1383>XP_005255217 Length = 1751 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 CLGSEARS 8 C GS ARS Sbjct: 1377 CKGSGARS 1384>XP_006717224 Length = 915 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 CLGSEAR 7 CLG +AR Sbjct: 699 CLGVDAR 705>XP_006717223 Length = 557 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 CLGSEAR 7 CLG +AR Sbjct: 328 CLGVDAR 334>XP_006717222 Length = 557 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 CLGSEAR 7 CLG +AR Sbjct: 328 CLGVDAR 334>XP_006717221 Length = 793 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 CLGSEAR 7 CLG +AR Sbjct: 700 CLGVDAR 706>XP_006717220 Length = 825 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 CLGSEAR 7 CLG +AR Sbjct: 700 CLGVDAR 706>XP_006717219 Length = 856 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 CLGSEAR 7 CLG +AR Sbjct: 700 CLGVDAR 706>XP_006717218 Length = 877 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 CLGSEAR 7 CLG +AR Sbjct: 648 CLGVDAR 654>XP_006717217 Length = 905 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 CLGSEAR 7 CLG +AR Sbjct: 676 CLGVDAR 682>XP_006717216 Length = 916 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 CLGSEAR 7 CLG +AR Sbjct: 700 CLGVDAR 706>XP_006717215 Length = 928 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 CLGSEAR 7 CLG +AR Sbjct: 699 CLGVDAR 705>XP_006717214 Length = 929 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 CLGSEAR 7 CLG +AR Sbjct: 700 CLGVDAR 706>XP_006715992 Length = 387 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LGSEAR 7 LGSEAR Sbjct: 50 LGSEAR 55>XP_006715008 Length = 500 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 CLGSEARS 8 CLG ARS Sbjct: 478 CLGLMARS 485Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.316 0.126 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 464,004 Number of extensions: 471 Number of successful extensions: 42 Number of sequences better than 10000.0: 42 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 42 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |