Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005148 20 390 NP_009297 20 390 NP_659491 20 509 NP_851322 17 4312 NP_001026 16 5631 NP_001693 16 5631 XP_005259184 16 5631 XP_005251072 16 5631 XP_006711873 16 5631 XP_006711872 16 5631 XP_006711871 16 5631 XP_006711870 16 5631 XP_006711869 16 5631 XP_006711868 16 5631 XP_006711867 16 5631 XP_006711866 16 5631 XP_006711865 16 5631 NP_009049 16 7355 NP_001139 16 7355 NP_543007 16 7355 NP_848652 16 7355 XP_006714558 16 7355 XP_006714257 16 7355 XP_005263002 16 7355 XP_005262999 16 7355 XP_006714252 16 7355 XP_006714251 16 7355 XP_006714250 16 7355 XP_006710219 16 7355 NP_062545 16 7355 NP_060128 15 9605 XP_006720237 15 9605 XP_005267827 15 9605 XP_005267826 15 9605>NP_005148 Length = 1130 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 CLAISRSSE 9 CLAISR+SE Sbjct: 1040 CLAISRNSE 1048>NP_009297 Length = 1149 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 CLAISRSSE 9 CLAISR+SE Sbjct: 1059 CLAISRNSE 1067>NP_659491 Length = 620 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 CLAISRSSE 9 CLAISRS E Sbjct: 69 CLAISRSGE 77>NP_851322 Length = 724 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 CLAISRSSE 9 CL +S SSE Sbjct: 386 CLVLSTSSE 394>NP_001026 Length = 4967 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 CLAISRSS 8 CL+ SRSS Sbjct: 132 CLSTSRSS 139>NP_001693 Length = 1584 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 CLAISRSS 8 CLA SRSS Sbjct: 196 CLAGSRSS 203>XP_005259184 Length = 576 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LAISRSSE 9 LA+SRS+E Sbjct: 45 LAVSRSTE 52>XP_005251072 Length = 1586 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 CLAISRSS 8 CLA SRSS Sbjct: 196 CLAGSRSS 203>XP_006711873 Length = 4954 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 CLAISRSS 8 CL+ SRSS Sbjct: 132 CLSTSRSS 139>XP_006711872 Length = 2735 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 CLAISRSS 8 CL+ SRSS Sbjct: 132 CLSTSRSS 139>XP_006711871 Length = 4906 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 CLAISRSS 8 CL+ SRSS Sbjct: 132 CLSTSRSS 139>XP_006711870 Length = 4965 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 CLAISRSS 8 CL+ SRSS Sbjct: 132 CLSTSRSS 139>XP_006711869 Length = 4973 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 CLAISRSS 8 CL+ SRSS Sbjct: 132 CLSTSRSS 139>XP_006711868 Length = 4975 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 CLAISRSS 8 CL+ SRSS Sbjct: 132 CLSTSRSS 139>XP_006711867 Length = 4977 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 CLAISRSS 8 CL+ SRSS Sbjct: 132 CLSTSRSS 139>XP_006711866 Length = 4984 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 CLAISRSS 8 CL+ SRSS Sbjct: 132 CLSTSRSS 139>XP_006711865 Length = 4985 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 CLAISRSS 8 CL+ SRSS Sbjct: 132 CLSTSRSS 139>NP_009049 Length = 3097 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 CLAISRSS 8 C+A SRSS Sbjct: 1717 CIAHSRSS 1724>NP_001139 Length = 3957 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LAISRSSE 9 LA+ RSSE Sbjct: 1669 LAVGRSSE 1676>NP_543007 Length = 336 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 CLAISRSS 8 CLA +RSS Sbjct: 296 CLASARSS 303>NP_848652 Length = 302 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 CLAISRS 7 C A+SRS Sbjct: 128 CFAVSRS 134>XP_006714558 Length = 2612 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 CLAISRSS 8 C+A SRSS Sbjct: 1232 CIAHSRSS 1239>XP_006714257 Length = 4145 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LAISRSSE 9 LA+ RSSE Sbjct: 1678 LAVGRSSE 1685>XP_005263002 Length = 4072 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LAISRSSE 9 LA+ RSSE Sbjct: 1636 LAVGRSSE 1643>XP_005262999 Length = 4147 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LAISRSSE 9 LA+ RSSE Sbjct: 1680 LAVGRSSE 1687>XP_006714252 Length = 4153 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LAISRSSE 9 LA+ RSSE Sbjct: 1686 LAVGRSSE 1693>XP_006714251 Length = 4165 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LAISRSSE 9 LA+ RSSE Sbjct: 1698 LAVGRSSE 1705>XP_006714250 Length = 4190 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LAISRSSE 9 LA+ RSSE Sbjct: 1723 LAVGRSSE 1730>XP_006710219 Length = 218 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 CLAISRS 7 C A+SRS Sbjct: 44 CFAVSRS 50>NP_062545 Length = 299 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 CLAISR 6 CLA+SR Sbjct: 50 CLAVSR 55>NP_060128 Length = 571 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 CLAISRSSE 9 C+ ISR +E Sbjct: 137 CIGISRFAE 145>XP_006720237 Length = 332 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 CLAISRSSE 9 C+ ISR +E Sbjct: 151 CIGISRFAE 159>XP_005267827 Length = 571 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 CLAISRSSE 9 C+ ISR +E Sbjct: 137 CIGISRFAE 145>XP_005267826 Length = 585 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 CLAISRSSE 9 C+ ISR +E Sbjct: 151 CIGISRFAE 159Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.315 0.119 0.320 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 330,623 Number of extensions: 416 Number of successful extensions: 34 Number of sequences better than 10000.0: 34 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 34 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |