Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005179 19 869 NP_733762 19 869 XP_006713860 19 869 XP_006713859 19 869 XP_005247910 19 869 XP_005247909 19 869 NP_058633 18 1482 XP_006724562 18 1482 XP_005274609 18 1482 NP_001274679 17 3301 NP_001598 17 3301 XP_006713185 17 3301 NP_001444 16 7355 NP_787055 16 7355 NP_062831 16 7355 NP_001137474 16 7355 XP_006724566 16 7355 XP_005274619 16 7355 NP_055558 15 9605 NP_001094060 15 9605 NP_066288 15 9605 XP_006713998 15 9605 XP_006713997 15 9605>NP_005179 Length = 906 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 GLEAMALK 9 GLEAMALK Sbjct: 218 GLEAMALK 225>NP_733762 Length = 982 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 GLEAMALK 9 GLEAMALK Sbjct: 210 GLEAMALK 217>XP_006713860 Length = 914 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 GLEAMALK 9 GLEAMALK Sbjct: 238 GLEAMALK 245>XP_006713859 Length = 966 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 GLEAMALK 9 GLEAMALK Sbjct: 238 GLEAMALK 245>XP_005247910 Length = 982 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 GLEAMALK 9 GLEAMALK Sbjct: 210 GLEAMALK 217>XP_005247909 Length = 1010 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 GLEAMALK 9 GLEAMALK Sbjct: 238 GLEAMALK 245>NP_058633 Length = 1462 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 CGLEAMALK 9 C +EAMALK Sbjct: 514 CKVEAMALK 522>XP_006724562 Length = 1326 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 CGLEAMALK 9 C +EAMALK Sbjct: 378 CKVEAMALK 386>XP_005274609 Length = 1468 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 CGLEAMALK 9 C +EAMALK Sbjct: 520 CKVEAMALK 528>NP_001274679 Length = 476 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 CGLEAMAL 8 CG +AMAL Sbjct: 6 CGTKAMAL 13>NP_001598 Length = 424 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 CGLEAMAL 8 CG+E+M+L Sbjct: 148 CGVESMSL 155>XP_006713185 Length = 364 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 CGLEAMAL 8 CG+E+M+L Sbjct: 148 CGVESMSL 155>NP_001444 Length = 553 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 CGLEAMAL 8 C L+AM+L Sbjct: 395 CNLQAMSL 402>NP_787055 Length = 586 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 CGLEAMALK 9 CGL A+K Sbjct: 30 CGLRVTAIK 38>NP_062831 Length = 586 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 CGLEAMALK 9 CGL A+K Sbjct: 30 CGLRVTAIK 38>NP_001137474 Length = 586 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 CGLEAMALK 9 CGL A+K Sbjct: 30 CGLRVTAIK 38>XP_006724566 Length = 586 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 CGLEAMALK 9 CGL A+K Sbjct: 30 CGLRVTAIK 38>XP_005274619 Length = 586 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 CGLEAMALK 9 CGL A+K Sbjct: 30 CGLRVTAIK 38>NP_055558 Length = 1395 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 CGLEAM 6 CG++AM Sbjct: 50 CGIDAM 55>NP_001094060 Length = 1395 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 CGLEAM 6 CG++AM Sbjct: 50 CGIDAM 55>NP_066288 Length = 565 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 CGLEAMA 7 CG EAM+ Sbjct: 507 CGREAMS 513>XP_006713998 Length = 1332 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 CGLEAM 6 CG++AM Sbjct: 50 CGIDAM 55>XP_006713997 Length = 1419 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 CGLEAM 6 CG++AM Sbjct: 50 CGIDAM 55Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.326 0.135 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 357,402 Number of extensions: 342 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |